C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily C, member 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021541 Trpc7 10090 - 13:56773113-56895789 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022023 Trpc7-001 56773113-56895737 protein_coding
  ENSMUST00000109871 Trpc7-002 56773113-56895776 protein_coding
  ENSMUST00000151918 Trpc7-003 56773270-56895789 nonsense_mediated_decay
  ENSMUST00000173067 Trpc7-005 56773764-56895494 nonsense_mediated_decay
  ENSMUST00000173466 Trpc7-009 56773764-56895494 nonsense_mediated_decay
  ENSMUST00000173513 Trpc7-008 56773764-56895494 protein_coding
  ENSMUST00000173817 Trpc7-006 56773764-56895494 protein_coding
  ENSMUST00000174457 Trpc7-004 56773764-56895494 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022023ENSMUST00000109871ENSMUST00000151918ENSMUST00000173067ENSMUST00000173513ENSMUST00000173817ENSMUST00000174457
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022023 N/A 0.077±0.01 N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A 0.015±0.00 N/A
ENSMUST00000109871 N/A N/A 0.654±0.18 N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 0.045±0.00
ENSMUST00000151918 N/A N/A 0.755±0.00 0.086±0.02 0.009±0.00 0.009±0.00 N/A 0.011±0.00 0.008±0.00 0.034±0.01 0.015±0.01 N/A
ENSMUST00000173067 0.027±0.01 0.185±0.03 N/A 0.046±0.00 N/A 0.015±0.00 0.014±0.00 N/A N/A 0.018±0.00 0.023±0.00 0.142±0.11
ENSMUST00000173513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A
ENSMUST00000173817 N/A N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174457 N/A N/A 0.373±0.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P3 CIL_0005P3_0002 CGP 13:56703010-56895789
CIL_0005P0 CIL_0005P0_0002 CGP 13:56773113-57908314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005262 IDA calcium channel activity
GO:0005634 IEA nucleus
GO:0005801 IEA cis-Golgi network
GO:0005886 IEA plasma membrane
GO:0006816 IDA calcium ion transport
GO:0006828 IDA manganese ion transport
GO:0016021 IC integral component of membrane
GO:0048471 IEA perinuclear region of cytoplasm
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027523 TRPC7 (1 of 3) transient receptor potential cation channel, subfamily C, member 7 protein_coding Danio_rerio
ENSDARG00000037660 TRPC7 (2 of 3) transient receptor potential cation channel, subfamily C, member 7 protein_coding Danio_rerio
ENSDARG00000079469 TRPC7 (3 of 3) transient receptor potential cation channel, subfamily C, member 7 protein_coding Danio_rerio
ENSG00000069018 TRPC7 transient receptor potential cation channel, subfamily C, member 7 protein_coding Homo_sapiens

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