C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173067 Trpc7-005 ENSMUSG00000021541 10090 - 13:56773764-56895494 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonKidneyLiverOvaryPlacentaTestisENSMUST00000173067
Transcript ID Adipose Adrenal Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000173067 0.027±0.01 0.185±0.03 0.046±0.00 0.015±0.00 0.014±0.00 0.018±0.00 0.023±0.00 0.142±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P3 CIL_0005P3_0002 CGP 13:56703010-56895789
CIL_0005P0 CIL_0005P0_0002 CGP 13:56773113-57908314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IDA calcium channel activity
GO:0006816 IDA calcium ion transport
GO:0006828 IDA manganese ion transport
GO:0016021 IC integral component of membrane
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352189 TRPC7-003 protein_coding Homo_sapiens 0 1498
ENST00000378459 TRPC7-005 protein_coding Homo_sapiens 0 1498
ENST00000502753 TRPC7-006 protein_coding Homo_sapiens 0 1498
ENST00000503275 TRPC7-002 nonsense_mediated_decay Homo_sapiens 0 1498
ENST00000509288 TRPC7-007 retained_intron Homo_sapiens 0 658
ENST00000513104 TRPC7-001 protein_coding Homo_sapiens 0 1498
ENST00000514963 TRPC7-004 nonsense_mediated_decay Homo_sapiens 0 2569

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