C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005P0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000069018-ENSG00000152377 CGP 9606 5:136213320-137598379
GeneTranscriptPositionBiotype
ENSG00000152377 (SPOCK1)
sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 		ENST00000282223 (SPOCK1-201) 136975300-137267065 protein_coding
ENST00000394945 (SPOCK1-001) 136975298-137499348 protein_coding
ENST00000503916 (SPOCK1-002) 137112494-137598379 processed_transcript
ENST00000505690 (SPOCK1-003) 137112492-137498594 protein_coding
ENST00000508642 (SPOCK1-007) 136988553-136993160 processed_transcript
ENST00000509293 (SPOCK1-005) 137267015-137365461 processed_transcript
ENST00000509978 (SPOCK1-008) 136978792-136988837 processed_transcript
ENST00000510405 (SPOCK1-006) 137112435-137313538 protein_coding
ENST00000510689 (SPOCK1-004) 136992554-137499299 protein_coding
ENST00000515091 (SPOCK1-009) 136978454-136979500 retained_intron
ENSG00000213568 (HNRNPA1P13)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 13 		ENST00000510646 (HNRNPA1P13-001) 136428892-136429854 processed_pseudogene
ENSG00000222285 (RNA5SP193)
RNA, 5S ribosomal pseudogene 193 		ENST00000410353 (RNA5SP193-201) 136969200-136969306 rRNA
ENSG00000248211 (TRPC7-AS1)
TRPC7 antisense RNA 1 		ENST00000514459 (TRPC7-AS1-001) 136214048-136222159 antisense
ENSG00000248351 (HSPD1P18)
heat shock 60kDa protein 1 (chaperonin) pseudogene 18 		ENST00000504252 (HSPD1P18-001) 136381268-136381511 processed_pseudogene
ENSG00000248616 (CTB-1I21.2)
 ENST00000511236 (CTB-1I21.2-001) 136857628-136858342 processed_pseudogene
ENSG00000249803 (RP11-114H21.2)
 ENST00000446720 (RP11-114H21.2-001) 136466677-136520298 lincRNA
ENST00000511165 (RP11-114H21.2-002) 136466677-136509028 lincRNA
ENSG00000250284 (CTB-1I21.1)
 ENST00000502421 (CTB-1I21.1-001) 136734927-136754686 lincRNA
ENSG00000250947 (TRPC7-AS2)
TRPC7 antisense RNA 2 		ENST00000513958 (TRPC7-AS2-001) 136303757-136316100 antisense
ENSG00000279240 (AC063980.3)
 ENST00000514282 (AC063980.3-001) 136376348-136397042 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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Structures from Ensembl
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CIL_0005P0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021541-ENSMUSG00000056222 CGP 10090 13:56773113-57908314
GeneTranscriptPositionBiotype
ENSMUSG00000021541 (Trpc7)
transient receptor potential cation channel, subfamily C, member 7 		ENSMUST00000022023 (Trpc7-001) 56773113-56895737 protein_coding
ENSMUST00000109871 (Trpc7-002) 56773113-56895776 protein_coding
ENSMUST00000151918 (Trpc7-003) 56773270-56895789 nonsense_mediated_decay
ENSMUST00000173067 (Trpc7-005) 56773764-56895494 nonsense_mediated_decay
ENSMUST00000173466 (Trpc7-009) 56773764-56895494 nonsense_mediated_decay
ENSMUST00000173513 (Trpc7-008) 56773764-56895494 protein_coding
ENSMUST00000173817 (Trpc7-006) 56773764-56895494 protein_coding
ENSMUST00000174457 (Trpc7-004) 56773764-56895494 protein_coding
ENSMUSG00000056222 (Spock1)
sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 		ENSMUST00000172326 (Spock1-201) 57429295-57907587 protein_coding
ENSMUST00000185502 (Spock1-002) 57426094-57908275 protein_coding
ENSMUST00000185905 (Spock1-004) 57434415-57908299 retained_intron
ENSMUST00000186271 (Spock1-005) 57428710-57908291 protein_coding
ENSMUST00000187852 (Spock1-001) 57421195-57908314 protein_coding
ENSMUST00000189373 (Spock1-003) 57421207-57908275 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005P0_0001ENSG00000152377ENST00000282223ENST00000394945ENST00000503916ENST00000505690ENST00000508642ENST00000509293ENST00000509978ENST00000510405ENST00000510689ENST00000515091ENSG00000213568ENST00000510646ENSG00000222285ENST00000410353ENSG00000248211ENST00000514459ENSG00000248351ENST00000504252ENSG00000248616ENST00000511236ENSG00000249803ENST00000446720ENST00000511165ENSG00000250284ENST00000502421ENSG00000250947ENST00000513958ENSG00000279240ENST00000514282CIL_0005P0_0002ENSMUSG00000021541ENSMUST00000022023ENSMUST00000109871ENSMUST00000151918ENSMUST00000173067ENSMUST00000173466ENSMUST00000173513ENSMUST00000173817ENSMUST00000174457ENSMUSG00000056222ENSMUST00000172326ENSMUST00000185502ENSMUST00000185905ENSMUST00000186271ENSMUST00000187852ENSMUST00000189373
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005P0_0001ENSG00000152377ENST00000282223ENST00000394945ENST00000505690ENST00000509978ENST00000510405ENST00000515091ENSG00000213568ENST00000510646ENSG00000222285ENST00000410353ENSG00000248211ENST00000514459ENSG00000248351ENST00000504252ENSG00000248616ENST00000511236ENSG00000249803ENST00000446720ENST00000511165ENSG00000250284ENST00000502421ENSG00000250947ENST00000513958ENSG00000279240ENST00000514282CIL_0005P0_0002ENSMUSG00000021541ENSMUST00000022023ENSMUST00000109871ENSMUST00000151918ENSMUST00000173067ENSMUST00000173513ENSMUST00000173817ENSMUST00000174457ENSMUSG00000056222ENSMUST00000172326ENSMUST00000185502ENSMUST00000185905ENSMUST00000186271ENSMUST00000187852ENSMUST00000189373
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000152377 ENST00000282223 N/A 0.398±0.00 0.806±0.00 N/A 0.879±0.00 0.103±0.00 N/A 0.014±0.00 N/A 0.139±0.00 N/A 0.306±0.00 2.976±0.02 N/A
ENST00000394945 37.015±0.00 0.459±0.00 0.866±0.00 37.848±29.92 2.617±0.71 16.926±0.00 2.557±2.09 11.322±0.00 2.749±0.00 0.473±0.00 10.407±0.00 0.730±0.00 3.855±2.75 7.321±0.00
ENST00000503916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505690 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A N/A
ENST00000508642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.441±0.00 N/A N/A N/A
ENST00000510405 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.377±0.00 N/A N/A N/A N/A
ENST00000510689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515091 N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A 0.431±0.00 12.846±0.00 9.163±0.00
ENSG00000213568 ENST00000510646 0.107±0.00 0.056±0.00 N/A 0.072±0.00 0.014±0.00 0.193±0.00 N/A 0.127±0.06 0.013±0.00 0.082±0.00 0.161±0.00 N/A N/A 0.028±0.01
ENSG00000222285 ENST00000410353 N/A N/A N/A N/A N/A 178.701±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248211 ENST00000514459 N/A N/A N/A 0.398±0.00 N/A 0.101±0.00 N/A 0.626±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000248351 ENST00000504252 N/A N/A N/A N/A 0.060±0.00 N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000248616 ENST00000511236 N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 0.024±0.00
ENSG00000249803 ENST00000446720 N/A 0.217±0.00 0.232±0.00 0.336±0.00 0.221±0.18 0.164±0.00 0.080±0.00 0.131±0.00 0.075±0.00 0.311±0.00 0.038±0.00 0.735±0.00 0.578±0.00 0.227±0.02
ENST00000511165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.268±0.00 0.085±0.00
ENSG00000250284 ENST00000502421 0.070±0.00 N/A N/A 0.265±0.00 0.067±0.00 N/A 0.021±0.00 0.134±0.00 N/A 0.095±0.00 0.218±0.00 0.069±0.00 0.121±0.02 0.072±0.00
ENSG00000250947 ENST00000513958 0.023±0.00 0.049±0.00 N/A 0.027±0.00 N/A N/A 0.068±0.00 0.076±0.00 N/A N/A N/A 0.030±0.00 N/A N/A
ENSG00000279240 ENST00000514282 0.033±0.00 0.034±0.00 N/A 0.143±0.00 0.237±0.00 N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A 0.031±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021541 ENSMUST00000022023 N/A 0.077±0.01 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A 0.015±0.00 N/A
ENSMUST00000109871 N/A N/A N/A 0.654±0.18 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 0.045±0.00
ENSMUST00000151918 N/A N/A N/A 0.755±0.00 N/A 0.086±0.02 0.009±0.00 0.009±0.00 N/A 0.011±0.00 0.008±0.00 0.034±0.01 0.015±0.01 N/A
ENSMUST00000173067 0.027±0.01 0.185±0.03 N/A N/A N/A 0.046±0.00 N/A 0.015±0.00 0.014±0.00 N/A N/A 0.018±0.00 0.023±0.00 0.142±0.11
ENSMUST00000173466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A
ENSMUST00000173817 N/A N/A N/A N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174457 N/A N/A N/A 0.373±0.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056222 ENSMUST00000172326 0.032±0.02 N/A N/A 6.320±0.00 0.090±0.00 0.743±0.12 0.027±0.01 0.062±0.02 0.028±0.01 0.043±0.00 0.038±0.00 0.579±0.15 0.216±0.00 0.400±0.25
ENSMUST00000185502 0.038±0.01 N/A N/A 17.923±5.73 0.064±0.03 0.068±0.02 0.011±0.00 0.067±0.02 0.028±0.04 0.025±0.00 N/A 0.189±0.08 0.118±0.07 0.079±0.01
ENSMUST00000185905 N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00
ENSMUST00000186271 N/A 1.957±0.43 N/A 74.782±0.00 0.037±0.00 0.207±0.00 N/A 0.076±0.00 0.053±0.04 0.016±0.00 0.026±0.00 0.346±0.17 1.010±0.63 0.198±0.09
ENSMUST00000187852 N/A 1.764±0.93 N/A N/A 0.071±0.00 0.184±0.00 N/A N/A N/A 0.013±0.01 N/A N/A N/A N/A
ENSMUST00000189373 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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