C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005P3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113658-ENSG00000069018 CGP 9606 5:136132845-136365537
GeneTranscriptPositionBiotype
ENSG00000113658 (SMAD5)
SMAD family member 5 		ENST00000506223 (SMAD5-008) 136133823-136154002 protein_coding
ENST00000507118 (SMAD5-002) 136132847-136154144 protein_coding
ENST00000507245 (SMAD5-009) 136147420-136153681 retained_intron
ENST00000507637 (SMAD5-010) 136160986-136172829 protein_coding
ENST00000509297 (SMAD5-004) 136133353-136153763 protein_coding
ENST00000509962 (SMAD5-007) 136133224-136153729 processed_transcript
ENST00000511116 (SMAD5-003) 136132847-136154163 protein_coding
ENST00000513418 (SMAD5-012) 136174469-136188747 nonsense_mediated_decay
ENST00000514777 (SMAD5-011) 136132904-136177386 processed_transcript
ENST00000515005 (SMAD5-005) 136133353-136153763 protein_coding
ENST00000545279 (SMAD5-001) 136132845-136182732 protein_coding
ENST00000545620 (SMAD5-201) 136132847-136182734 protein_coding
ENSG00000248211 (TRPC7-AS1)
TRPC7 antisense RNA 1 		ENST00000514459 (TRPC7-AS1-001) 136214048-136222159 antisense
ENSG00000250947 (TRPC7-AS2)
TRPC7 antisense RNA 2 		ENST00000513958 (TRPC7-AS2-001) 136303757-136316100 antisense
ENSG00000271824 (AC009014.3)
 ENST00000607574 (AC009014.3-001) 136191468-136193134 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005P3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021540-ENSMUSG00000021541 CGP 10090 13:56703010-56895789
GeneTranscriptPositionBiotype
ENSMUSG00000021540 (Smad5)
SMAD family member 5 		ENSMUST00000069557 (Smad5-001) 56703010-56742377 protein_coding
ENSMUST00000109874 (Smad5-003) 56703668-56740304 protein_coding
ENSMUST00000109876 (Smad5-002) 56703052-56739960 protein_coding
ENSMUST00000132302 (Smad5-005) 56703066-56733125 processed_transcript
ENSMUST00000136702 (Smad5-006) 56733017-56738993 processed_transcript
ENSMUST00000138677 (Smad5-004) 56703039-56733214 processed_transcript
ENSMUSG00000021541 (Trpc7)
transient receptor potential cation channel, subfamily C, member 7 		ENSMUST00000022023 (Trpc7-001) 56773113-56895737 protein_coding
ENSMUST00000109871 (Trpc7-002) 56773113-56895776 protein_coding
ENSMUST00000151918 (Trpc7-003) 56773270-56895789 nonsense_mediated_decay
ENSMUST00000173067 (Trpc7-005) 56773764-56895494 nonsense_mediated_decay
ENSMUST00000173466 (Trpc7-009) 56773764-56895494 nonsense_mediated_decay
ENSMUST00000173513 (Trpc7-008) 56773764-56895494 protein_coding
ENSMUST00000173817 (Trpc7-006) 56773764-56895494 protein_coding
ENSMUST00000174457 (Trpc7-004) 56773764-56895494 protein_coding
ENSMUSG00000098328 (Gm27271)
predicted gene, 27271 		ENSMUST00000183509 (Gm27271-201) 56704030-56704199 misc_RNA
ENSMUSG00000098732 (Gm27834)
predicted gene, 27834 		ENSMUST00000183427 (Gm27834-201) 56703881-56704005 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005P3_0001ENSG00000113658ENST00000506223ENST00000507118ENST00000507245ENST00000507637ENST00000509297ENST00000509962ENST00000511116ENST00000513418ENST00000514777ENST00000515005ENST00000545279ENST00000545620ENSG00000248211ENST00000514459ENSG00000250947ENST00000513958ENSG00000271824ENST00000607574CIL_0005P3_0002ENSMUSG00000021540ENSMUST00000069557ENSMUST00000109874ENSMUST00000109876ENSMUST00000132302ENSMUST00000136702ENSMUST00000138677ENSMUSG00000021541ENSMUST00000022023ENSMUST00000109871ENSMUST00000151918ENSMUST00000173067ENSMUST00000173466ENSMUST00000173513ENSMUST00000173817ENSMUST00000174457ENSMUSG00000098328ENSMUST00000183509ENSMUSG00000098732ENSMUST00000183427
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005P3_0001ENSG00000113658ENST00000506223ENST00000507118ENST00000507637ENST00000545279ENST00000545620ENSG00000248211ENST00000514459ENSG00000250947ENST00000513958ENSG00000271824ENST00000607574CIL_0005P3_0002ENSMUSG00000021540ENSMUST00000069557ENSMUST00000109874ENSMUST00000109876ENSMUST00000138677ENSMUSG00000021541ENSMUST00000022023ENSMUST00000109871ENSMUST00000151918ENSMUST00000173067ENSMUST00000173513ENSMUST00000173817ENSMUST00000174457ENSMUSG00000098328ENSMUST00000183509ENSMUSG00000098732ENSMUST00000183427
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113658 ENST00000506223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.197±0.00 N/A N/A N/A
ENST00000507118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.561±0.00 N/A N/A
ENST00000507245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.624±0.00 N/A N/A N/A
ENST00000509297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545279 2.369±0.00 0.690±0.00 3.048±0.00 1.377±0.00 3.155±1.39 2.291±1.54 1.502±0.58 1.297±0.00 0.859±0.00 5.511±0.00 0.866±0.00 3.731±2.65 1.789±0.52 1.837±0.00
ENST00000545620 5.701±0.00 4.945±0.00 N/A 2.472±0.12 3.798±1.03 3.626±2.61 2.018±1.23 6.490±0.00 5.256±2.99 4.783±0.00 1.584±0.92 3.753±2.44 3.573±0.94 4.449±2.89
ENSG00000248211 ENST00000514459 N/A N/A N/A 0.398±0.00 N/A 0.101±0.00 N/A 0.626±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000250947 ENST00000513958 0.023±0.00 0.049±0.00 N/A 0.027±0.00 N/A N/A 0.068±0.00 0.076±0.00 N/A N/A N/A 0.030±0.00 N/A N/A
ENSG00000271824 ENST00000607574 N/A N/A 2.635±0.00 1.006±0.16 0.031±0.00 1.059±0.44 N/A 18.615±0.00 N/A N/A 0.096±0.00 0.196±0.14 0.068±0.00 0.236±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021540 ENSMUST00000069557 16.835±6.76 6.589±3.41 9.549±0.95 13.524±7.88 9.088±2.85 6.808±1.71 6.461±1.35 9.319±1.47 5.048±1.13 16.621±2.04 3.493±1.02 16.093±3.93 10.602±2.82 3.261±1.07
ENSMUST00000109874 N/A 7.596±1.40 N/A N/A 3.821±0.91 3.590±0.65 N/A N/A 2.080±0.23 3.203±0.00 N/A 9.260±2.49 N/A N/A
ENSMUST00000109876 N/A N/A N/A N/A 4.625±2.53 N/A 1.537±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.073±0.91
ENSMUSG00000021541 ENSMUST00000022023 N/A 0.077±0.01 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A 0.015±0.00 N/A
ENSMUST00000109871 N/A N/A N/A 0.654±0.18 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 0.045±0.00
ENSMUST00000151918 N/A N/A N/A 0.755±0.00 N/A 0.086±0.02 0.009±0.00 0.009±0.00 N/A 0.011±0.00 0.008±0.00 0.034±0.01 0.015±0.01 N/A
ENSMUST00000173067 0.027±0.01 0.185±0.03 N/A N/A N/A 0.046±0.00 N/A 0.015±0.00 0.014±0.00 N/A N/A 0.018±0.00 0.023±0.00 0.142±0.11
ENSMUST00000173466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A
ENSMUST00000173817 N/A N/A N/A N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174457 N/A N/A N/A 0.373±0.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098328 ENSMUST00000183509 N/A N/A 3.368±1.51 8.268±0.00 N/A N/A N/A N/A 2.288±1.25 N/A N/A 2.081±0.18 7.929±3.04 N/A
ENSMUSG00000098732 ENSMUST00000183427 N/A N/A N/A N/A N/A N/A N/A 2101.300±0.00 23.841±0.00 N/A N/A N/A 22.299±10.95 N/A

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