C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein K
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021546 Hnrnpk 10090 - 13:58391142-58403343 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043269 Hnrnpk-002 58391239-58402502 protein_coding
  ENSMUST00000116403 Hnrnpk-001 58391142-58403343 protein_coding
  ENSMUST00000175847 Hnrnpk-011 58395165-58402487 protein_coding
  ENSMUST00000175939 Hnrnpk-003 58398726-58402502 retained_intron
  ENSMUST00000176207 Hnrnpk-008 58391337-58402649 protein_coding
  ENSMUST00000176257 Hnrnpk-020 58391960-58394785 retained_intron
  ENSMUST00000176269 Hnrnpk-006 58395265-58398017 retained_intron
  ENSMUST00000176305 Hnrnpk-014 58394661-58402103 protein_coding
  ENSMUST00000176359 Hnrnpk-019 58392122-58393975 retained_intron
  ENSMUST00000176558 Hnrnpk-007 58397037-58402116 protein_coding
  ENSMUST00000176609 Hnrnpk-015 58394603-58397065 retained_intron
  ENSMUST00000176725 Hnrnpk-017 58394690-58396946 retained_intron
  ENSMUST00000176797 Hnrnpk-021 58392233-58395198 protein_coding
  ENSMUST00000176849 Hnrnpk-012 58394348-58402142 protein_coding
  ENSMUST00000176888 Hnrnpk-016 58394540-58395720 retained_intron
  ENSMUST00000177019 Hnrnpk-009 58391239-58402464 protein_coding
  ENSMUST00000177051 Hnrnpk-018 58391950-58393868 retained_intron
  ENSMUST00000177060 Hnrnpk-010 58395195-58402507 protein_coding
  ENSMUST00000177117 Hnrnpk-005 58395270-58398017 protein_coding
  ENSMUST00000177377 Hnrnpk-013 58395889-58402110 retained_intron
  ENSMUST00000177497 Hnrnpk-004 58391239-58398055 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043269ENSMUST00000116403ENSMUST00000175847ENSMUST00000175939ENSMUST00000176207ENSMUST00000176305ENSMUST00000176797ENSMUST00000176888ENSMUST00000177051ENSMUST00000177497
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043269 52.711±23.61 18.940±2.88 159.362±12.40 114.149±67.74 31.330±10.27 28.825±8.45 22.872±2.90 39.146±11.48 75.394±60.27 55.850±13.90 29.818±3.87 57.465±52.37 102.414±71.07 36.552±11.21
ENSMUST00000116403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.231±1.23 N/A N/A N/A
ENSMUST00000175847 N/A N/A N/A 115.099±0.00 N/A N/A N/A N/A N/A N/A N/A 122.963±0.00 195.620±74.22 67.701±0.00
ENSMUST00000175939 N/A 191.668±36.00 N/A N/A 128.868±5.27 124.337±23.40 55.700±9.22 110.943±16.38 75.766±5.97 171.473±9.97 N/A 185.197±25.60 N/A N/A
ENSMUST00000176207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.157±0.56
ENSMUST00000176305 N/A N/A N/A 92.368±0.00 39.336±0.00 N/A N/A N/A N/A N/A N/A 114.768±0.00 175.938±67.74 52.345±0.00
ENSMUST00000176797 81.958±35.79 104.038±5.99 N/A N/A 65.233±29.14 87.021±4.19 29.641±3.37 59.639±6.42 71.612±7.01 89.035±14.94 N/A 118.960±15.32 309.790±0.00 58.202±9.27
ENSMUST00000176888 N/A N/A N/A N/A 55.379±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177051 N/A N/A N/A 70.161±0.00 N/A N/A N/A N/A N/A N/A N/A 100.838±0.00 145.272±59.31 22.899±0.00
ENSMUST00000177497 N/A N/A N/A N/A 16.874±0.91 14.749±3.07 N/A N/A N/A 17.988±0.00 N/A 25.383±0.00 31.623±11.00 8.526±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007C CIL_00007C_0003 CGP 13:58380046-58403343
CIL_00007B CIL_00007B_0003 CGP 13:58391142-58411149

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019013 IEA viral nucleocapsid
GO:0030054 IEA cell junction
GO:0030529 IEA ribonucleoprotein complex
GO:0042995 IEA cell projection
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome
GO:1902165 IMP regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007034 hnrpkl heterogeneous nuclear ribonucleoprotein K, like protein_coding Danio_rerio
ENSDARG00000018914 hnrnpk heterogeneous nuclear ribonucleoprotein K protein_coding Danio_rerio
ENSDARG00000078787 HNRNPK heterogeneous nuclear ribonucleoprotein K protein_coding Danio_rerio

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