C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein K
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043269 Hnrnpk-002 ENSMUSG00000021546 10090 - 13:58391239-58402502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043269
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043269 52.711±23.61 18.940±2.88 159.362±12.40 114.149±67.74 31.330±10.27 28.825±8.45 22.872±2.90 39.146±11.48 75.394±60.27 55.850±13.90 29.818±3.87 57.465±52.37 102.414±71.07 36.552±11.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007C CIL_00007C_0003 CGP 13:58380046-58403343
CIL_00007B CIL_00007B_0003 CGP 13:58391142-58411149

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome
GO:1902165 IMP regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351839 HNRNPK-012 protein_coding Homo_sapiens 0 3496
ENST00000360384 HNRNPK-002 protein_coding Homo_sapiens 0 2815
ENST00000376256 HNRNPK-006 retained_intron Homo_sapiens 0 494
ENST00000376263 HNRNPK-201 protein_coding Homo_sapiens 0 2084
ENST00000376281 HNRNPK-011 protein_coding Homo_sapiens 0 2084
ENST00000447355 HNRNPKP2-001 processed_pseudogene Homo_sapiens 0 1760
ENST00000457156 HNRNPK-005 protein_coding Homo_sapiens 0 1144
ENST00000472778 HNRNPK-008 nonsense_mediated_decay Homo_sapiens 0 595
ENST00000481820 HNRNPK-010 protein_coding Homo_sapiens 0 449
ENST00000483135 HNRNPK-004 retained_intron Homo_sapiens 0 350
ENST00000485383 HNRNPKP4-001 processed_pseudogene Homo_sapiens 0 1903
ENST00000492865 HNRNPK-009 retained_intron Homo_sapiens 0 442
ENST00000493362 HNRNPK-007 retained_intron Homo_sapiens 0 342
ENST00000510896 HNRNPKP1-001 processed_pseudogene Homo_sapiens 0 1731
ENST00000511537 HNRNPKP3-003 processed_transcript Homo_sapiens 0 1286
ENST00000534639 HNRNPKP3-001 transcribed_processed_pseudogene Homo_sapiens 0 780

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