C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein K
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177497 Hnrnpk-004 ENSMUSG00000021546 10090 - 13:58391239-58398055 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLungOvaryPlacentaTestisENSMUST00000177497
Transcript ID Breast Colon Lung Ovary Placenta Testis
ENSMUST00000177497 16.874±0.91 14.749±3.07 17.988±0.00 25.383±0.00 31.623±11.00 8.526±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007C CIL_00007C_0003 CGP 13:58380046-58403343
CIL_00007B CIL_00007B_0003 CGP 13:58391142-58411149

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome
GO:1902165 IMP regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351839 HNRNPK-012 protein_coding Homo_sapiens 0 3147
ENST00000360384 HNRNPK-002 protein_coding Homo_sapiens 0 2466
ENST00000376256 HNRNPK-006 retained_intron Homo_sapiens 0 966
ENST00000376263 HNRNPK-201 protein_coding Homo_sapiens 0 1735
ENST00000376281 HNRNPK-011 protein_coding Homo_sapiens 0 1735
ENST00000447355 HNRNPKP2-001 processed_pseudogene Homo_sapiens 0 1439
ENST00000457156 HNRNPK-005 protein_coding Homo_sapiens 0 1144
ENST00000472778 HNRNPK-008 nonsense_mediated_decay Homo_sapiens 0 595
ENST00000481820 HNRNPK-010 protein_coding Homo_sapiens 0 449
ENST00000485383 HNRNPKP4-001 processed_pseudogene Homo_sapiens 0 1598
ENST00000492865 HNRNPK-009 retained_intron Homo_sapiens 0 442
ENST00000493362 HNRNPK-007 retained_intron Homo_sapiens 0 342
ENST00000510896 HNRNPKP1-001 processed_pseudogene Homo_sapiens 0 1467
ENST00000511537 HNRNPKP3-003 processed_transcript Homo_sapiens 0 1286
ENST00000534639 HNRNPKP3-001 transcribed_processed_pseudogene Homo_sapiens 0 780

Loading