C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002XB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000024325-ENSDARG00000052734 CGP 7955 5:52599245-52678922
GeneTranscriptPositionBiotype
ENSDARG00000024325 (col4a3bpa)
collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a 		ENSDART00000035299 (col4a3bpa-201) 52599568-52650625 protein_coding
ENSDART00000092938 (col4a3bpa-002) 52599568-52650625 protein_coding
ENSDART00000148501 (col4a3bpa-004) 52639451-52649242 protein_coding
ENSDART00000149500 (col4a3bpa-005) 52644677-52646674 retained_intron
ENSDART00000149787 (col4a3bpa-001) 52599245-52654187 protein_coding
ENSDART00000149892 (col4a3bpa-003) 52639486-52650635 protein_coding
ENSDARG00000052734 (hmgcra)
3-hydroxy-3-methylglutaryl-Coenzyme A reductase a 		ENSDART00000097460 (hmgcra-001) 52658957-52678922 protein_coding
ENSDART00000149553 (hmgcra-002) 52659897-52678901 protein_coding
CIL_0002XB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063542-ENSDARG00000059301 CGP 7955 21:2332740-2392546
GeneTranscriptPositionBiotype
ENSDARG00000059301 (hmgcrb)
3-hydroxy-3-methylglutaryl-Coenzyme A reductase b 		ENSDART00000145813 (hmgcrb-001) 2365310-2392546 protein_coding
ENSDARG00000063542 (COL4A3BP (2 of 2))
collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 		ENSDART00000013851 (COL4A3BP (2 of 2)-202) 2332740-2358396 protein_coding
ENSDART00000108553 (COL4A3BP (2 of 2)-201) 2332740-2358396 protein_coding
CIL_0002XB_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021669-ENSMUSG00000021670 CGP 10090 13:96542618-96670936
GeneTranscriptPositionBiotype
ENSMUSG00000021669 (Col4a3bp)
collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 		ENSMUST00000077672 (Col4a3bp-201) 96542735-96640167 protein_coding
ENSMUST00000109444 (Col4a3bp-202) 96542735-96640167 protein_coding
ENSMUST00000179226 (Col4a3bp-203) 96542618-96638015 protein_coding
ENSMUSG00000021670 (Hmgcr)
3-hydroxy-3-methylglutaryl-Coenzyme A reductase 		ENSMUST00000022176 (Hmgcr-001) 96648967-96670936 protein_coding
ENSMUST00000163201 (Hmgcr-002) 96658883-96670875 retained_intron
ENSMUST00000168374 (Hmgcr-011) 96666318-96670848 retained_intron
ENSMUST00000168855 (Hmgcr-006) 96650276-96666763 nonsense_mediated_decay
ENSMUST00000169196 (Hmgcr-008) 96660149-96670823 protein_coding
ENSMUST00000169202 (Hmgcr-004) 96652121-96656667 protein_coding
ENSMUST00000169945 (Hmgcr-005) 96650443-96652803 protein_coding
ENSMUST00000169966 (Hmgcr-007) 96666115-96669654 protein_coding
ENSMUST00000170287 (Hmgcr-003) 96651354-96666710 protein_coding
ENSMUST00000171537 (Hmgcr-009) 96666120-96670482 protein_coding
ENSMUST00000172440 (Hmgcr-010) 96665705-96666587 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XB_0001ENSDARG00000024325ENSDART00000035299ENSDART00000092938ENSDART00000148501ENSDART00000149500ENSDART00000149787ENSDART00000149892ENSDARG00000052734ENSDART00000097460ENSDART00000149553CIL_0002XB_0002ENSDARG00000059301ENSDART00000145813ENSDARG00000063542ENSDART00000013851ENSDART00000108553CIL_0002XB_0003ENSMUSG00000021669ENSMUST00000077672ENSMUST00000109444ENSMUST00000179226ENSMUSG00000021670ENSMUST00000022176ENSMUST00000163201ENSMUST00000168374ENSMUST00000168855ENSMUST00000169196ENSMUST00000169202ENSMUST00000169945ENSMUST00000169966ENSMUST00000170287ENSMUST00000171537ENSMUST00000172440
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XB_0001ENSDARG00000024325ENSDART00000035299ENSDART00000092938ENSDART00000149787ENSDART00000149892ENSDARG00000052734ENSDART00000097460ENSDART00000149553CIL_0002XB_0002ENSDARG00000059301ENSDART00000145813ENSDARG00000063542ENSDART00000013851ENSDART00000108553CIL_0002XB_0003ENSMUSG00000021669ENSMUST00000077672ENSMUST00000109444ENSMUST00000179226ENSMUSG00000021670ENSMUST00000022176ENSMUST00000168855ENSMUST00000169196ENSMUST00000169202ENSMUST00000170287
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000024325 ENSDART00000035299 N/A N/A N/A 1.070±0.43 N/A N/A 1.147±0.00 4.452±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000092938 N/A N/A N/A N/A N/A N/A N/A N/A 0.246±0.00 N/A N/A N/A N/A N/A
ENSDART00000148501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149787 N/A N/A N/A 0.898±0.00 N/A N/A 0.704±0.28 2.386±0.29 0.290±0.00 N/A 0.938±0.00 N/A N/A N/A
ENSDART00000149892 N/A N/A N/A 0.678±0.00 N/A N/A 0.736±0.31 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000052734 ENSDART00000097460 N/A N/A N/A 1.406±0.93 N/A N/A 0.349±0.00 3.004±0.00 1.011±0.00 N/A 0.363±0.00 N/A N/A N/A
ENSDART00000149553 N/A N/A N/A 1.062±0.03 N/A N/A 0.142±0.07 3.777±0.00 1.883±0.00 N/A 0.276±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000059301 ENSDART00000145813 N/A N/A N/A 7.286±2.65 N/A N/A 4.443±4.23 4.048±2.61 4.135±0.00 N/A 6.804±0.00 N/A N/A N/A
ENSDARG00000063542 ENSDART00000013851 N/A N/A N/A 11.562±2.27 N/A N/A 7.603±0.00 7.485±0.00 6.378±0.00 N/A 3.225±0.00 N/A N/A N/A
ENSDART00000108553 N/A N/A N/A 3.464±1.60 N/A N/A 4.976±4.50 N/A N/A N/A 3.290±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021669 ENSMUST00000077672 4.581±1.71 5.554±0.00 6.028±0.52 3.489±0.70 3.938±0.99 3.323±1.91 4.097±0.14 2.064±0.63 1.951±0.74 4.034±1.11 8.578±0.84 2.263±0.84 3.250±1.59 4.938±2.64
ENSMUST00000109444 2.194±1.12 13.445±4.07 12.805±2.25 1.746±0.40 6.170±3.00 6.061±1.04 0.688±0.00 5.643±1.18 3.118±0.69 5.811±1.69 1.315±0.24 7.339±2.35 3.147±1.92 N/A
ENSMUST00000179226 N/A 46.211±32.53 N/A 2.860±0.00 4.113±0.23 N/A 0.991±0.00 2.418±0.00 N/A N/A N/A 4.233±1.80 2.237±0.67 16.716±9.74
ENSMUSG00000021670 ENSMUST00000022176 4.164±1.56 11.149±4.83 7.222±1.21 29.485±8.59 3.673±0.24 14.908±1.67 1.538±0.09 13.920±3.69 25.583±12.14 9.216±0.50 0.821±0.11 14.299±6.31 17.057±10.34 18.066±5.15
ENSMUST00000163201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168855 N/A N/A N/A N/A 4.521±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169196 N/A 13.971±4.34 N/A N/A 3.138±0.18 7.004±0.00 N/A N/A N/A 4.037±0.48 N/A 6.557±1.08 N/A N/A
ENSMUST00000169202 N/A 9.872±0.00 N/A 52.275±0.00 N/A N/A N/A N/A N/A N/A N/A 82.849±0.00 82.708±0.00 49.339±0.00
ENSMUST00000169945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.208±0.00 N/A 14.073±0.00
ENSMUST00000171537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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