C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sterile alpha motif domain containing 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021770 Samd8 10090 + 14:21750531-21798725 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022292 Samd8-001 21750531-21793302 protein_coding
  ENSMUST00000119430 Samd8-003 21751552-21798725 protein_coding
  ENSMUST00000142023 Samd8-004 21791872-21792975 retained_intron
  ENSMUST00000144061 Samd8-002 21750548-21793302 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022292ENSMUST00000119430ENSMUST00000144061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022292 N/A 2.691±0.00 N/A N/A 7.565±0.00 1.922±0.41 2.233±0.42 N/A N/A N/A N/A 3.578±0.93 N/A 29.168±13.19
ENSMUST00000119430 2.815±1.38 4.920±0.71 1.338±0.00 3.535±2.41 2.434±1.24 2.336±1.21 2.618±0.15 4.909±1.73 1.611±0.89 2.657±0.00 2.566±1.43 4.861±1.86 5.471±3.15 3.099±0.98
ENSMUST00000144061 3.066±0.72 16.204±4.14 N/A N/A 3.934±0.57 5.461±1.57 2.357±0.12 4.343±1.01 3.094±0.60 4.200±0.27 N/A 9.946±3.44 3.986±0.00 15.996±6.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082Q CIL_00082Q_0002 VISTA 14:21162242-21763695
CIL_0007JX CIL_0007JX_0002 UCNEbase 14:21252402-23394598
CIL_0008UO CIL_0008UO_0002 VISTA 14:21553194-22153685
CIL_000925 CIL_000925_0002 VISTA 14:21565849-22167377
CIL_00084B CIL_00084B_0002 VISTA 14:21666827-22268239
CIL_0006DL CIL_0006DL_0003 CGP 14:21676582-21751181
CIL_0008K8 CIL_0008K8_0002 VISTA 14:21690858-22291990
CIL_0007IJ CIL_0007IJ_0002 CGP 14:21733394-21798725
CIL_0007IK CIL_0007IK_0002 CGP 14:21750531-21845879

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006686 NAS sphingomyelin biosynthetic process
GO:0016021 NAS integral component of membrane
GO:0016740 IEA transferase activity
GO:0030176 ISS integral component of endoplasmic reticulum membrane
GO:0046513 ISS ceramide biosynthetic process
GO:2000303 ISS regulation of ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076184 SAMD8 sterile alpha motif domain containing 8 protein_coding Danio_rerio
ENSG00000156671 SAMD8 sterile alpha motif domain containing 8 protein_coding Homo_sapiens

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