C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha motif domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119430 Samd8-003 ENSMUSG00000021770 10090 + 14:21751552-21798725 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119430 2.815±1.38 4.920±0.71 1.338±0.00 3.535±2.41 2.434±1.24 2.336±1.21 2.618±0.15 4.909±1.73 1.611±0.89 2.657±0.00 2.566±1.43 4.861±1.86 5.471±3.15 3.099±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082Q CIL_00082Q_0002 VISTA 14:21162242-21763695
CIL_0007JX CIL_0007JX_0002 UCNEbase 14:21252402-23394598
CIL_0008UO CIL_0008UO_0002 VISTA 14:21553194-22153685
CIL_000925 CIL_000925_0002 VISTA 14:21565849-22167377
CIL_00084B CIL_00084B_0002 VISTA 14:21666827-22268239
CIL_0006DL CIL_0006DL_0003 CGP 14:21676582-21751181
CIL_0008K8 CIL_0008K8_0002 VISTA 14:21690858-22291990
CIL_0007IJ CIL_0007IJ_0002 CGP 14:21733394-21798725
CIL_0007IK CIL_0007IK_0002 CGP 14:21750531-21845879

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314523 SUMO2-002 protein_coding Homo_sapiens 0 254
ENST00000326669 SUMO4-001 protein_coding Homo_sapiens 0 265
ENST00000372687 SAMD8-001 protein_coding Homo_sapiens 0 1273
ENST00000372690 SAMD8-002 protein_coding Homo_sapiens 0 1783
ENST00000403109 SUMO2P13-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000404494 RP3-509I19.6-001 transcribed_processed_pseudogene Homo_sapiens 3e-37 158
ENST00000414746 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000417139 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000418008 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000420826 SUMO2-001 protein_coding Homo_sapiens 0 322
ENST00000428065 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000434672 SUMO2P8-001 processed_pseudogene Homo_sapiens 0 233
ENST00000436431 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000438311 SUMO2P3-001 processed_pseudogene Homo_sapiens 0 263
ENST00000443604 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000445436 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000447533 SAMD8-003 protein_coding Homo_sapiens 0 1051
ENST00000455040 SUMO2P1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000456482 SUMO2P2-001 processed_pseudogene Homo_sapiens 0.0000000000002 79
ENST00000504193 SUMO2P4-002 processed_pseudogene Homo_sapiens 0 241
ENST00000504438 SUMO2P17-001 transcribed_processed_pseudogene Homo_sapiens 0 267
ENST00000505273 SUMO2P6-001 processed_pseudogene Homo_sapiens 0 274
ENST00000506790 SUMO2P5-001 processed_pseudogene Homo_sapiens 5e-40 167
ENST00000520803 SUMO2P20-001 processed_pseudogene Homo_sapiens 0 224
ENST00000536192 RP1-241P17.4-001 processed_pseudogene Homo_sapiens 0 307
ENST00000542569 SAMD8-201 protein_coding Homo_sapiens 0 1803
ENST00000572284 RP3-509I19.6-002 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000578238 SUMO2-003 protein_coding Homo_sapiens 0 281

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