C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha motif domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022292 Samd8-001 ENSMUSG00000021770 10090 + 14:21750531-21793302 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartOvaryTestisENSMUST00000022292
Transcript ID Adrenal Breast Colon Heart Ovary Testis
ENSMUST00000022292 2.691±0.00 7.565±0.00 1.922±0.41 2.233±0.42 3.578±0.93 29.168±13.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082Q CIL_00082Q_0002 VISTA 14:21162242-21763695
CIL_0007JX CIL_0007JX_0002 UCNEbase 14:21252402-23394598
CIL_0008UO CIL_0008UO_0002 VISTA 14:21553194-22153685
CIL_000925 CIL_000925_0002 VISTA 14:21565849-22167377
CIL_00084B CIL_00084B_0002 VISTA 14:21666827-22268239
CIL_0006DL CIL_0006DL_0003 CGP 14:21676582-21751181
CIL_0008K8 CIL_0008K8_0002 VISTA 14:21690858-22291990
CIL_0007IJ CIL_0007IJ_0002 CGP 14:21733394-21798725
CIL_0007IK CIL_0007IK_0002 CGP 14:21750531-21845879

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006686 NAS sphingomyelin biosynthetic process
GO:0016021 NAS integral component of membrane
GO:0016740 IEA transferase activity
GO:0030176 ISS integral component of endoplasmic reticulum membrane
GO:0046513 ISS ceramide biosynthetic process
GO:2000303 ISS regulation of ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372687 SAMD8-001 protein_coding Homo_sapiens 0 1273
ENST00000372690 SAMD8-002 protein_coding Homo_sapiens 0 1895
ENST00000447533 SAMD8-003 protein_coding Homo_sapiens 0 1051
ENST00000542569 SAMD8-201 protein_coding Homo_sapiens 0 1834

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