C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha motif domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137543 Samd4-002 ENSMUSG00000021838 10090 + 14:46884175-47105811 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverOvaryPlacentaENSMUST00000137543
Transcript ID Adipose Bladder Brain Kidney Liver Ovary Placenta
ENSMUST00000137543 1.072±0.51 2.318±0.00 0.796±0.57 0.354±0.09 0.120±0.05 0.484±0.00 2.020±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0002 VISTA 14:46305651-46906520
CIL_00090Z CIL_00090Z_0002 VISTA 14:46310670-46911777
CIL_0004OT CIL_0004OT_0002 CGP 14:46832134-47105817
CIL_000009 CIL_000009_0003 CGP 14:46882854-47189413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0030054 IEA cell junction
GO:0043005 IEA neuron projection
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251091 SAMD4A-001 protein_coding Homo_sapiens 0 3398
ENST00000392067 SAMD4A-201 protein_coding Homo_sapiens 0 2121
ENST00000553988 SAMD4A-010 processed_transcript Homo_sapiens 0 416
ENST00000554335 SAMD4A-003 protein_coding Homo_sapiens 0 1666
ENST00000555091 SAMD4A-008 processed_transcript Homo_sapiens 0 499
ENST00000555112 SAMD4A-005 processed_transcript Homo_sapiens 0 1260
ENST00000555192 SAMD4A-006 protein_coding Homo_sapiens 0 990
ENST00000555719 SAMD4A-011 processed_transcript Homo_sapiens 0 418
ENST00000556069 SAMD4A-012 retained_intron Homo_sapiens 0 420
ENST00000557013 SAMD4A-004 retained_intron Homo_sapiens 0 752
ENST00000557692 SAMD4A-007 processed_transcript Homo_sapiens 0 752

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