C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sin3-associated polypeptide 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021963 Sap18 10090 + 14:57798180-57804980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000111267 Sap18-002 57798638-57802335 protein_coding
  ENSMUST00000111268 Sap18-003 57798632-57802327 protein_coding
  ENSMUST00000111269 Sap18-006 57798218-57804969 protein_coding
  ENSMUST00000128764 Sap18-001 57798180-57804980 protein_coding
  ENSMUST00000131455 Sap18-004 57798264-57798849 retained_intron
  ENSMUST00000143600 Sap18-005 57798426-57802147 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111268ENSMUST00000111269ENSMUST00000128764ENSMUST00000131455ENSMUST00000143600
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.904±2.26
ENSMUST00000111269 N/A 6.185±1.50 N/A N/A N/A 5.573±0.50 N/A N/A 9.040±1.59 N/A N/A 6.258±0.44 40.309±19.03 N/A
ENSMUST00000128764 4.215±0.43 6.901±1.07 7.487±1.64 5.511±0.81 4.332±0.65 4.895±0.97 3.271±0.71 7.040±1.08 5.048±1.86 6.469±0.33 4.074±0.57 6.010±1.49 3.244±1.11 2.812±0.54
ENSMUST00000131455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.651±1.36 4.788±0.00 N/A N/A
ENSMUST00000143600 7.738±2.46 N/A 51.116±3.63 29.366±6.49 6.768±2.68 N/A 9.650±0.50 10.024±3.79 30.823±26.92 5.429±0.00 24.816±3.57 30.757±26.01 83.696±39.16 27.495±25.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SR CIL_0003SR_0002 CGP 14:57642077-57804980
CIL_0003SS CIL_0003SS_0002 CGP 14:57798180-57826163

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0043065 ISS positive regulation of apoptotic process
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0061574 ISS ASAP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057854 sap18 sin3-associated polypeptide protein_coding Danio_rerio
ENSG00000150459 SAP18 Sin3A-associated protein, 18kDa protein_coding Homo_sapiens

Loading