C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sin3-associated polypeptide 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128764 Sap18-001 ENSMUSG00000021963 10090 + 14:57798180-57804980 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000128764
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000128764 4.215±0.43 6.901±1.07 7.487±1.64 5.511±0.81 4.332±0.65 4.895±0.97 3.271±0.71 7.040±1.08 5.048±1.86 6.469±0.33 4.074±0.57 6.010±1.49 3.244±1.11 2.812±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SR CIL_0003SR_0002 CGP 14:57642077-57804980
CIL_0003SS CIL_0003SS_0002 CGP 14:57798180-57826163

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0043065 ISS positive regulation of apoptotic process
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0061574 ISS ASAP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382533 SAP18-001 protein_coding Homo_sapiens 0 929
ENST00000434334 AC013733.5-001 processed_pseudogene Homo_sapiens 0 444
ENST00000450573 SAP18-008 protein_coding Homo_sapiens 0 464
ENST00000467636 SAP18-005 protein_coding Homo_sapiens 0 597
ENST00000471009 SAP18-007 processed_transcript Homo_sapiens 0 385
ENST00000485646 SAP18-004 processed_transcript Homo_sapiens 0 246
ENST00000492245 SAP18-006 protein_coding Homo_sapiens 0 239
ENST00000607003 SAP18-009 protein_coding Homo_sapiens 0 869
ENST00000621421 SAP18-201 protein_coding Homo_sapiens 0 929

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