C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sin3A-associated protein, 18kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000150459 SAP18 9606 + 13:21140514-21149084 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382533 SAP18-001 21140514-21149082 protein_coding
  ENST00000450573 SAP18-008 21140774-21147319 protein_coding
  ENST00000467636 SAP18-005 21140886-21147603 protein_coding
  ENST00000471009 SAP18-007 21146464-21147391 processed_transcript
  ENST00000485646 SAP18-004 21140612-21141619 processed_transcript
  ENST00000492245 SAP18-006 21140615-21147413 protein_coding
  ENST00000607003 SAP18-009 21140578-21149082 protein_coding
  ENST00000621421 SAP18-201 21140514-21149084 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382533ENST00000450573ENST00000467636ENST00000492245ENST00000607003ENST00000621421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382533 N/A N/A 10.344±0.00 13.656±0.00 7.827±0.00 9.693±0.00 6.737±0.70 3.927±0.00 5.862±0.00 10.895±0.64 10.644±4.62 16.881±10.33 4.011±0.00 34.786±0.00
ENST00000450573 53.848±0.00 68.002±0.00 25.765±0.00 35.540±0.00 46.465±10.08 74.461±41.05 42.600±14.78 46.672±28.19 42.620±4.21 47.921±16.98 54.052±25.30 75.467±27.15 46.481±2.68 87.451±20.94
ENST00000467636 N/A N/A N/A 17.773±0.00 N/A N/A 13.534±0.00 N/A 9.510±0.00 9.676±0.00 N/A 15.993±0.00 28.364±0.00 N/A
ENST00000492245 N/A 45.768±0.00 N/A N/A N/A N/A 33.031±0.00 42.592±14.71 32.094±0.00 37.436±0.00 42.430±10.75 64.445±0.00 55.500±0.00 98.780±0.00
ENST00000607003 5.304±0.00 N/A N/A 10.261±0.00 4.529±0.00 N/A 9.333±0.00 N/A N/A N/A 5.237±0.00 12.485±3.02 12.092±2.41 N/A
ENST00000621421 N/A N/A N/A N/A N/A N/A N/A N/A 14.765±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SR CIL_0003SR_0001 CGP 13:20973032-21149084
CIL_0003SS CIL_0003SS_0001 CGP 13:21140514-21176602

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0035145 IDA exon-exon junction complex
GO:0043065 IDA positive regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0061574 IDA ASAP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057854 sap18 sin3-associated polypeptide protein_coding Danio_rerio
ENSMUSG00000021963 Sap18 Sin3-associated polypeptide 18 protein_coding Mus_musculus
ENSMUSG00000061104 Gm10094 predicted gene 10094 protein_coding Mus_musculus

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