C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162939 Spata13-003 ENSMUSG00000021990 10090 + 14:60751077-60762666 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLungMuscleOvaryENSMUST00000162939
Transcript ID Adipose Breast Colon Heart Kidney Lung Muscle Ovary
ENSMUST00000162939 1.452±0.14 1.866±0.25 2.785±0.87 0.773±0.00 2.287±0.61 1.652±0.30 0.263±0.00 4.329±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FK CIL_0008FK_0002 VISTA 14:60252726-60856031
CIL_0000G5 CIL_0000G5_0003 CGP 14:60634001-60780869

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110275 arhgef9b-203 protein_coding Danio_rerio 0 228
ENSDART00000146113 arhgef9b-001 protein_coding Danio_rerio 0 228
ENST00000343003 SPATA13-201 protein_coding Homo_sapiens 0 1081
ENST00000382095 SPATA13-001 protein_coding Homo_sapiens 0 1081
ENST00000382108 SPATA13-202 protein_coding Homo_sapiens 0 1081
ENST00000382141 RP11-307N16.6-001 nonsense_mediated_decay Homo_sapiens 0 900
ENST00000399949 SPATA13-006 protein_coding Homo_sapiens 0 1081
ENST00000409126 SPATA13-011 protein_coding Homo_sapiens 0 1081
ENST00000424834 SPATA13-008 protein_coding Homo_sapiens 0 1081
ENST00000434675 SPATA13-010 protein_coding Homo_sapiens 0 1081

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