C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160973 Spata13-001 ENSMUSG00000021990 10090 + 14:60634243-60764549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160973
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160973 0.748±0.00 5.942±0.89 1.003±0.13 1.444±0.38 0.791±0.00 2.367±1.10 0.990±0.43 1.342±0.47 0.206±0.18 2.644±1.49 0.377±0.11 0.280±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FK CIL_0008FK_0002 VISTA 14:60252726-60856031
CIL_0000G5 CIL_0000G5_0003 CGP 14:60634001-60780869

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 ISS guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 ISS cytoplasm
GO:0016477 ISS cell migration
GO:0030027 ISS lamellipodium
GO:0030032 ISS lamellipodium assembly
GO:0030175 ISS filopodium
GO:0030334 ISS regulation of cell migration
GO:0030676 ISS Rac guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032587 ISS ruffle membrane
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043547 ISS positive regulation of GTPase activity
GO:0046847 ISS filopodium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110275 arhgef9b-203 protein_coding Danio_rerio 0 315
ENSDART00000146113 arhgef9b-001 protein_coding Danio_rerio 0 315
ENST00000326016 ARHGEF4-001 protein_coding Homo_sapiens 0 505
ENST00000343003 SPATA13-201 protein_coding Homo_sapiens 0 1890
ENST00000355771 ARHGEF4-009 protein_coding Homo_sapiens 0 505
ENST00000382095 SPATA13-001 protein_coding Homo_sapiens 0 2117
ENST00000382108 SPATA13-202 protein_coding Homo_sapiens 0 2117
ENST00000382141 RP11-307N16.6-001 nonsense_mediated_decay Homo_sapiens 0 1840
ENST00000392953 ARHGEF4-201 protein_coding Homo_sapiens 0 505
ENST00000399949 SPATA13-006 protein_coding Homo_sapiens 0 1890
ENST00000409126 SPATA13-011 protein_coding Homo_sapiens 0 1363
ENST00000409303 ARHGEF4-005 protein_coding Homo_sapiens 0 202
ENST00000424834 SPATA13-008 protein_coding Homo_sapiens 0 2117
ENST00000434675 SPATA13-010 protein_coding Homo_sapiens 0 1363
ENST00000439368 ARHGEF4-010 processed_transcript Homo_sapiens 0 202
ENST00000496764 ARHGEF4-007 processed_transcript Homo_sapiens 2e-38 163
ENST00000525839 ARHGEF4-002 protein_coding Homo_sapiens 0 505
ENST00000528247 ARHGEF4-011 processed_transcript Homo_sapiens 0 189
ENST00000611048 ARHGEF4-203 protein_coding Homo_sapiens 0 202

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