C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022566 Spata13-201 ENSMUSG00000021990 10090 + 14:60634729-60764556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022566 0.607±0.17 4.931±1.18 1.680±0.35 1.687±0.80 0.516±0.00 0.990±0.21 0.684±0.30 1.879±0.73 1.634±0.54 1.325±0.26 0.139±0.05 2.761±1.16 0.955±0.18 0.288±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FK CIL_0008FK_0002 VISTA 14:60252726-60856031
CIL_0000G5 CIL_0000G5_0003 CGP 14:60634001-60780869

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 ISS guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 ISS cytoplasm
GO:0016477 ISS cell migration
GO:0030027 ISS lamellipodium
GO:0030032 ISS lamellipodium assembly
GO:0030175 ISS filopodium
GO:0030334 ISS regulation of cell migration
GO:0030676 ISS Rac guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032587 ISS ruffle membrane
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043547 ISS positive regulation of GTPase activity
GO:0046847 ISS filopodium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110275 arhgef9b-203 protein_coding Danio_rerio 0 315
ENSDART00000146113 arhgef9b-001 protein_coding Danio_rerio 0 315
ENST00000326016 ARHGEF4-001 protein_coding Homo_sapiens 0 505
ENST00000343003 SPATA13-201 protein_coding Homo_sapiens 0 1890
ENST00000355771 ARHGEF4-009 protein_coding Homo_sapiens 0 505
ENST00000382095 SPATA13-001 protein_coding Homo_sapiens 0 2117
ENST00000382108 SPATA13-202 protein_coding Homo_sapiens 0 2117
ENST00000382141 RP11-307N16.6-001 nonsense_mediated_decay Homo_sapiens 0 1840
ENST00000392953 ARHGEF4-201 protein_coding Homo_sapiens 0 505
ENST00000399949 SPATA13-006 protein_coding Homo_sapiens 0 1890
ENST00000409126 SPATA13-011 protein_coding Homo_sapiens 0 1363
ENST00000409303 ARHGEF4-005 protein_coding Homo_sapiens 0 202
ENST00000424834 SPATA13-008 protein_coding Homo_sapiens 0 2117
ENST00000434675 SPATA13-010 protein_coding Homo_sapiens 0 1363
ENST00000439368 ARHGEF4-010 processed_transcript Homo_sapiens 0 202
ENST00000496764 ARHGEF4-007 processed_transcript Homo_sapiens 2e-38 163
ENST00000525839 ARHGEF4-002 protein_coding Homo_sapiens 0 505
ENST00000528247 ARHGEF4-011 processed_transcript Homo_sapiens 0 189
ENST00000611048 ARHGEF4-203 protein_coding Homo_sapiens 0 202

Loading