C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SUB1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022205 Sub1 10090 - 15:11981339-11996983 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022816 Sub1-001 11981339-11996058 protein_coding
  ENSMUST00000110504 Sub1-002 11984041-11996983 protein_coding
  ENSMUST00000129533 Sub1-004 11986134-11996012 retained_intron
  ENSMUST00000134414 Sub1-003 11986454-11995750 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022816ENSMUST00000110504ENSMUST00000129533ENSMUST00000134414
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022816 1.730±0.32 1.548±0.34 6.804±0.76 22.035±7.26 1.393±0.36 1.045±0.23 1.024±0.17 1.370±0.39 2.852±1.42 2.430±0.74 6.915±0.62 2.434±1.94 6.649±1.50 1.464±0.16
ENSMUST00000110504 1.730±0.27 N/A 32.875±2.59 68.020±51.01 2.567±0.88 N/A 3.301±0.64 3.795±2.26 21.212±16.44 3.255±0.45 29.187±3.19 85.741±21.92 144.589±82.70 21.258±25.33
ENSMUST00000129533 5.677±0.78 N/A 30.567±9.19 N/A 1.596±0.00 1.407±0.75 2.123±0.69 2.199±0.52 42.009±14.13 2.095±0.00 6.692±0.00 13.126±11.10 40.150±13.91 10.105±5.00
ENSMUST00000134414 N/A N/A N/A 123.645±0.00 N/A 0.879±0.00 N/A N/A 2.260±0.00 N/A N/A 30.277±42.17 159.916±0.00 94.920±91.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060395 IDA SMAD protein signal transduction
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007720 sub1b SUB1 homolog b (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000053446 sub1a SUB1 homolog a (S. cerevisiae) protein_coding Danio_rerio
ENSG00000113387 SUB1 SUB1 homolog (S. cerevisiae) protein_coding Homo_sapiens

Loading