C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SUB1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113387 SUB1 9606 + 5:32531633-32604079 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265073 SUB1-001 32585499-32604079 protein_coding
  ENST00000502453 SUB1-005 32594923-32601130 retained_intron
  ENST00000502897 SUB1-007 32585588-32601150 protein_coding
  ENST00000504016 SUB1-015 32588537-32601342 processed_transcript
  ENST00000504789 SUB1-008 32585887-32601257 processed_transcript
  ENST00000506237 SUB1-011 32531633-32601323 protein_coding
  ENST00000510442 SUB1-009 32585600-32591687 protein_coding
  ENST00000511175 SUB1-014 32591248-32601093 retained_intron
  ENST00000511615 SUB1-004 32585559-32601988 nonsense_mediated_decay
  ENST00000511988 SUB1-010 32586114-32591685 retained_intron
  ENST00000512913 SUB1-012 32531818-32601200 protein_coding
  ENST00000513013 SUB1-013 32531849-32601055 processed_transcript
  ENST00000515355 SUB1-006 32585571-32601282 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265073ENST00000502453ENST00000502897ENST00000504016ENST00000504789ENST00000506237ENST00000511615ENST00000515355
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265073 6.940±0.00 10.061±0.00 2.547±0.00 35.035±3.14 14.174±2.50 7.644±0.48 8.141±0.98 5.717±1.64 7.082±3.93 7.013±0.57 4.591±0.78 10.783±1.64 7.487±2.80 8.076±1.53
ENST00000502453 N/A N/A 0.895±0.00 N/A N/A N/A N/A N/A N/A 1.474±0.00 N/A N/A N/A N/A
ENST00000502897 15.591±0.00 N/A N/A 36.558±0.00 48.303±19.23 24.143±3.81 9.890±0.00 23.716±0.67 12.908±0.00 30.611±0.00 N/A 26.008±0.00 N/A N/A
ENST00000504016 N/A 32.685±0.00 N/A N/A 45.201±0.00 23.870±0.00 18.615±0.00 24.708±0.00 15.260±0.00 28.159±0.00 N/A N/A N/A 37.401±0.00
ENST00000504789 25.157±0.00 32.270±0.00 N/A N/A N/A 36.639±0.00 34.515±0.00 51.553±0.00 30.678±0.00 55.803±0.00 16.226±0.00 79.987±8.45 42.355±9.19 42.204±10.05
ENST00000506237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.501±0.00 N/A N/A
ENST00000511615 4.853±0.00 9.669±0.00 1.598±0.00 N/A N/A 5.423±0.00 N/A 3.447±0.00 N/A N/A N/A 18.024±6.97 6.967±1.66 9.628±1.03
ENST00000515355 N/A N/A 5.216±0.00 N/A N/A N/A N/A N/A N/A 9.672±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SE CIL_0002SE_0002 CGP 5:32354350-32604079
CIL_000211 CIL_000211_0002 CGP 5:32531633-32791724

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003713 IDA:IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060395 IEA SMAD protein signal transduction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007720 sub1b SUB1 homolog b (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000053446 sub1a SUB1 homolog a (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000022205 Sub1 SUB1 homolog (S. cerevisiae) protein_coding Mus_musculus

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