C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUB1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022816 Sub1-001 ENSMUSG00000022205 10090 - 15:11981339-11996058 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022816
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022816 1.730±0.32 1.548±0.34 6.804±0.76 22.035±7.26 1.393±0.36 1.045±0.23 1.024±0.17 1.370±0.39 2.852±1.42 2.430±0.74 6.915±0.62 2.434±1.94 6.649±1.50 1.464±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060395 IDA SMAD protein signal transduction
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265073 SUB1-001 protein_coding Homo_sapiens 0 702
ENST00000502453 SUB1-005 retained_intron Homo_sapiens 0 261
ENST00000502897 SUB1-007 protein_coding Homo_sapiens 0 483
ENST00000504016 SUB1-015 processed_transcript Homo_sapiens 0 298
ENST00000504789 SUB1-008 processed_transcript Homo_sapiens 0 486
ENST00000506237 SUB1-011 protein_coding Homo_sapiens 0 634
ENST00000510442 SUB1-009 protein_coding Homo_sapiens 0 228
ENST00000511175 SUB1-014 retained_intron Homo_sapiens 0 359
ENST00000511615 SUB1-004 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000511988 SUB1-010 retained_intron Homo_sapiens 0 228
ENST00000512913 SUB1-012 protein_coding Homo_sapiens 0 521
ENST00000513013 SUB1-013 processed_transcript Homo_sapiens 0 320
ENST00000515355 SUB1-006 protein_coding Homo_sapiens 0 616
ENST00000524415 SUB1P1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000564581 SUB1P3-001 processed_pseudogene Homo_sapiens 0 276
ENST00000566062 SUB1P4-001 processed_pseudogene Homo_sapiens 0 228

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