C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: triple functional domain (PTPRF interacting)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022263 Trio 10090 - 15:27730652-28025848 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090247 Trio-201 27730652-28025848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090247
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090247 7.807±2.66 5.777±1.14 3.609±2.70 20.353±1.92 5.847±2.21 6.774±1.85 4.042±0.53 6.081±1.94 1.110±0.44 5.139±1.98 3.012±0.64 7.092±3.18 5.663±2.07 1.413±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UF CIL_0007UF_0002 VISTA 15:27483860-28085186
CIL_0003XF CIL_0003XF_0002 CGP 15:27730652-28472045

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0019899 IEA enzyme binding
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000370 triob trio Rho guanine nucleotide exchange factor b protein_coding Danio_rerio
ENSDARG00000019426 trioa trio Rho guanine nucleotide exchange factor a protein_coding Danio_rerio
ENSG00000038382 TRIO trio Rho guanine nucleotide exchange factor protein_coding Homo_sapiens

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