C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: triple functional domain (PTPRF interacting)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090247 Trio-201 ENSMUSG00000022263 10090 - 15:27730652-28025848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090247
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090247 7.807±2.66 5.777±1.14 3.609±2.70 20.353±1.92 5.847±2.21 6.774±1.85 4.042±0.53 6.081±1.94 1.110±0.44 5.139±1.98 3.012±0.64 7.092±3.18 5.663±2.07 1.413±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UF CIL_0007UF_0002 VISTA 15:27483860-28085186
CIL_0003XF CIL_0003XF_0002 CGP 15:27730652-28472045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0019899 IEA enzyme binding
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087055 trioa-201 protein_coding Danio_rerio 0 4300
ENSDART00000144275 trioa-001 protein_coding Danio_rerio 0 4300
ENSDART00000000382 triob-201 protein_coding Danio_rerio 0 2700
ENSDART00000153785 triob-001 protein_coding Danio_rerio 0 1953
ENST00000240874 KALRN-005 protein_coding Homo_sapiens 0 1304
ENST00000344135 TRIO-009 protein_coding Homo_sapiens 0 2872
ENST00000344204 TRIO-001 protein_coding Homo_sapiens 0 12200
ENST00000354186 KALRN-004 protein_coding Homo_sapiens 0 1513
ENST00000360013 KALRN-201 protein_coding Homo_sapiens 0 1399
ENST00000393501 KALRN-008 retained_intron Homo_sapiens 0 1267
ENST00000439170 KALRN-009 protein_coding Homo_sapiens 0 366
ENST00000460856 KALRN-013 protein_coding Homo_sapiens 0 1419
ENST00000484224 KALRN-020 retained_intron Homo_sapiens 0 412
ENST00000498499 KALRN-021 retained_intron Homo_sapiens 0 315
ENST00000502490 TRIO-019 retained_intron Homo_sapiens 0 420
ENST00000502816 TRIO-012 retained_intron Homo_sapiens 0 968
ENST00000503399 TRIO-016 retained_intron Homo_sapiens 0 521
ENST00000504606 TRIO-013 retained_intron Homo_sapiens 0 743
ENST00000505971 TRIO-011 retained_intron Homo_sapiens 0 750
ENST00000506611 TRIO-005 retained_intron Homo_sapiens 0 224
ENST00000508283 TRIO-021 retained_intron Homo_sapiens 0 479
ENST00000508717 TRIO-022 retained_intron Homo_sapiens 0 597
ENST00000509354 TRIO-020 retained_intron Homo_sapiens 0 782
ENST00000509967 TRIO-008 protein_coding Homo_sapiens 0 5707
ENST00000510281 TRIO-007 retained_intron Homo_sapiens 0 773
ENST00000510757 TRIO-023 retained_intron Homo_sapiens 0 438
ENST00000512070 TRIO-010 nonsense_mediated_decay Homo_sapiens 0 8785
ENST00000513206 TRIO-002 protein_coding Homo_sapiens 0 9354
ENST00000515144 TRIO-003 retained_intron Homo_sapiens 0 7902
ENST00000522553 KALRN-011 retained_intron Homo_sapiens 0 206
ENST00000620511 TRIO-201 protein_coding Homo_sapiens 0 976

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