C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CUB and Sushi multiple domains 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022311 Csmd3 10090 - 15:47580637-48792063 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100670 Csmd3-201 47580638-48791989 protein_coding
  ENSMUST00000110261 Csmd3-006 47947897-47961468 retained_intron
  ENSMUST00000160655 Csmd3-002 48285611-48791989 retained_intron
  ENSMUST00000160658 Csmd3-004 47580637-48791933 protein_coding
  ENSMUST00000160716 Csmd3-003 48254342-48791989 processed_transcript
  ENSMUST00000161173 Csmd3-008 47629237-47634293 retained_intron
  ENSMUST00000161653 Csmd3-005 47581723-48001621 protein_coding
  ENSMUST00000162006 Csmd3-007 47581726-47615201 retained_intron
  ENSMUST00000162830 Csmd3-001 47580722-48792063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100670ENSMUST00000110261ENSMUST00000160655ENSMUST00000160658ENSMUST00000160716ENSMUST00000161173ENSMUST00000161653ENSMUST00000162006ENSMUST00000162830
Transcript ID Adipose Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100670 N/A N/A 0.198±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110261 N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A 0.033±0.00 N/A 0.544±0.10
ENSMUST00000160655 N/A N/A N/A N/A 0.016±0.00 0.040±0.00 N/A N/A N/A N/A N/A
ENSMUST00000160658 N/A N/A 0.526±0.31 N/A N/A 0.002±0.00 N/A N/A 0.007±0.00 0.001±0.00 N/A
ENSMUST00000160716 0.019±0.00 N/A 2.074±0.86 N/A N/A 0.023±0.00 0.029±0.00 N/A 0.147±0.07 0.013±0.01 N/A
ENSMUST00000161173 N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A 0.034±0.01 N/A N/A
ENSMUST00000161653 0.005±0.00 N/A 0.605±0.00 0.012±0.00 N/A 0.001±0.00 N/A 0.005±0.00 0.003±0.00 0.004±0.00 0.217±0.15
ENSMUST00000162006 N/A N/A N/A N/A N/A 0.009±0.01 N/A N/A N/A 0.004±0.00 N/A
ENSMUST00000162830 N/A 0.023±0.00 0.602±0.34 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RS CIL_0005RS_0002 CGP 15:45106284-48792063
CIL_0005RP CIL_0005RP_0002 CGP 15:47580637-50890463

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077905 CUB and Sushi multiple domains 3 protein_coding Danio_rerio
ENSG00000164796 CSMD3 CUB and Sushi multiple domains 3 protein_coding Homo_sapiens

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