C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CUB and Sushi multiple domains 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164796 CSMD3 9606 - 8:112222928-113437099 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297405 CSMD3-001 112222928-113437099 protein_coding
  ENST00000339701 CSMD3-007 112222932-112690042 protein_coding
  ENST00000343508 CSMD3-006 112222928-113377153 protein_coding
  ENST00000455883 CSMD3-002 112222932-113436883 protein_coding
  ENST00000462254 CSMD3-009 113098686-113173900 retained_intron
  ENST00000492692 CSMD3-008 112310225-112337575 retained_intron
  ENST00000493303 CSMD3-005 113309205-113436790 retained_intron
  ENST00000497026 CSMD3-003 113018776-113436939 retained_intron
  ENST00000519485 CSMD3-010 113098525-113173820 processed_transcript
  ENST00000534172 CSMD3-011 112224048-112255928 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297405ENST00000339701ENST00000343508ENST00000455883ENST00000462254ENST00000492692ENST00000493303ENST00000497026ENST00000534172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297405 N/A N/A N/A 0.321±0.00 N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A 0.149±0.00
ENST00000339701 0.004±0.00 N/A 0.011±0.00 N/A N/A N/A N/A N/A 0.002±0.00 0.029±0.00 N/A 0.014±0.00 N/A N/A
ENST00000343508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 0.002±0.00 0.452±0.00
ENST00000455883 N/A N/A N/A 2.060±0.00 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A
ENST00000462254 N/A N/A N/A N/A N/A N/A 0.570±0.00 N/A N/A 0.681±0.00 N/A N/A N/A 2.239±0.00
ENST00000492692 N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A 0.221±0.00 0.048±0.00 N/A N/A N/A
ENST00000493303 0.022±0.00 0.028±0.00 N/A N/A 0.016±0.00 0.026±0.00 0.011±0.00 0.012±0.00 N/A 0.019±0.00 0.134±0.00 0.002±0.00 0.006±0.00 N/A
ENST00000497026 N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A 0.349±0.00 N/A N/A 0.229±0.00 0.026±0.00 N/A
ENST00000534172 N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RS CIL_0005RS_0001 CGP 8:109963645-113437099
CIL_0005RP CIL_0005RP_0001 CGP 8:112222928-115809673

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077905 CUB and Sushi multiple domains 3 protein_coding Danio_rerio
ENSMUSG00000022311 Csmd3 CUB and Sushi multiple domains 3 protein_coding Mus_musculus

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