C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161653 Csmd3-005 ENSMUSG00000022311 10090 - 15:47581723-48001621 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverMuscleOvaryPlacentaTestisENSMUST00000161653
Transcript ID Adipose Brain Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000161653 0.005±0.00 0.605±0.00 0.012±0.00 0.001±0.00 0.005±0.00 0.003±0.00 0.004±0.00 0.217±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RS CIL_0005RS_0002 CGP 15:45106284-48792063
CIL_0005RP CIL_0005RP_0002 CGP 15:47580637-50890463

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006458 protein_coding Danio_rerio 0 900
ENSDART00000148564 protein_coding Danio_rerio 0 900
ENST00000297405 CSMD3-001 protein_coding Homo_sapiens 0 7914
ENST00000335551 CSMD1-006 protein_coding Homo_sapiens 0 296
ENST00000339701 CSMD3-007 protein_coding Homo_sapiens 0 11720
ENST00000343508 CSMD3-006 protein_coding Homo_sapiens 0 7914
ENST00000400186 CSMD1-004 protein_coding Homo_sapiens 0 296
ENST00000455883 CSMD3-002 protein_coding Homo_sapiens 0 4440
ENST00000492692 CSMD3-008 retained_intron Homo_sapiens 0 1437
ENST00000520002 CSMD1-001 protein_coding Homo_sapiens 0 296
ENST00000523488 CSMD1-008 retained_intron Homo_sapiens 0 230
ENST00000534172 CSMD3-011 retained_intron Homo_sapiens 0 2222
ENST00000537824 CSMD1-201 protein_coding Homo_sapiens 0 296
ENST00000602557 CSMD1-017 protein_coding Homo_sapiens 0 296
ENST00000602723 CSMD1-018 protein_coding Homo_sapiens 0 296

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