C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022325 Pop1 10090 + 15:34495304-34530648 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052290 Pop1-001 34495304-34530648 protein_coding
  ENSMUST00000079028 Pop1-002 34495323-34530637 protein_coding
  ENSMUST00000126223 Pop1-003 34509907-34512192 retained_intron
  ENSMUST00000132427 Pop1-005 34515790-34529161 retained_intron
  ENSMUST00000153061 Pop1-006 34526145-34529231 retained_intron
  ENSMUST00000155073 Pop1-004 34514170-34518018 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052290ENSMUST00000079028ENSMUST00000132427ENSMUST00000153061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052290 N/A N/A N/A 0.222±0.00 0.418±0.00 N/A 0.135±0.07 N/A 0.283±0.00 0.160±0.00 0.241±0.09 N/A 0.469±0.00 N/A
ENSMUST00000079028 0.940±0.28 0.393±0.08 1.148±0.05 2.502±1.56 0.546±0.22 0.644±0.23 0.446±0.07 0.807±0.36 3.261±2.42 0.538±0.11 0.867±0.12 1.826±1.03 3.348±1.99 0.676±0.16
ENSMUST00000132427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.857±0.00 N/A N/A 0.593±0.00
ENSMUST00000153061 2.355±0.02 0.828±0.00 N/A N/A N/A N/A 0.821±0.00 N/A N/A N/A N/A 3.318±1.02 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000684 CIL_000684_0002 CGP 15:34484021-34530648
CIL_0003C8 CIL_0003C8_0002 CGP 15:34495304-34678706

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000171 IEA ribonuclease MRP activity
GO:0000172 IEA ribonuclease MRP complex
GO:0001682 IEA tRNA 5'-leader removal
GO:0004526 IEA ribonuclease P activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005655 IEA nucleolar ribonuclease P complex
GO:0016078 IEA tRNA catabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0090501 IEA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087815 pop1 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) protein_coding Danio_rerio
ENSG00000104356 POP1 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) protein_coding Homo_sapiens

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