C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein L13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022370 Mrpl13 10090 - 15:55534094-55557748 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000107207 Mrpl13-004 55542871-55557283 retained_intron
  ENSMUST00000164542 Mrpl13-003 55534094-55557349 nonsense_mediated_decay
  ENSMUST00000165356 Mrpl13-005 55538636-55548164 protein_coding
  ENSMUST00000170135 Mrpl13-002 55549454-55557275 retained_intron
  ENSMUST00000172387 Mrpl13-001 55534094-55557748 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164542ENSMUST00000170135ENSMUST00000172387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164542 6.224±0.87 2.295±0.76 14.245±2.88 32.502±22.63 5.106±1.83 2.533±0.40 9.766±0.44 8.142±1.02 7.081±0.90 4.670±1.07 16.472±1.77 21.418±27.86 19.743±15.94 57.512±0.00
ENSMUST00000170135 N/A 0.190±0.07 N/A N/A 0.245±0.05 0.316±0.05 N/A N/A N/A N/A N/A 0.463±0.15 N/A N/A
ENSMUST00000172387 9.547±0.63 0.967±0.35 22.133±2.72 12.961±3.19 4.349±2.64 3.587±0.97 14.478±1.86 11.153±1.69 22.183±16.73 4.844±0.97 19.266±1.03 7.466±7.54 18.454±6.90 9.951±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009J CIL_00009J_0003 CGP 15:55307750-55557748
CIL_00008U CIL_00008U_0003 CGP 15:55534094-55626423

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005761 ISS mitochondrial ribosome
GO:0005762 ISO mitochondrial large ribosomal subunit
GO:0006412 IEA translation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056903 mrpl13 mitochondrial ribosomal protein L13 protein_coding Danio_rerio
ENSG00000172172 MRPL13 mitochondrial ribosomal protein L13 protein_coding Homo_sapiens

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