C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022387 Brd1 10090 - 15:88687300-88734233 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088911 Brd1-003 88698851-88734230 protein_coding
  ENSMUST00000109380 Brd1-002 88688296-88730771 protein_coding
  ENSMUST00000109381 Brd1-001 88687300-88734233 protein_coding
  ENSMUST00000139515 Brd1-006 88713433-88717040 processed_transcript
  ENSMUST00000150004 Brd1-005 88696046-88700864 processed_transcript
  ENSMUST00000156155 Brd1-004 88712900-88719155 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109380ENSMUST00000109381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109380 3.874±1.50 5.208±1.26 2.713±0.71 2.650±0.00 2.723±1.34 7.797±0.87 1.521±0.20 2.923±0.74 1.326±0.43 6.338±1.47 N/A 6.934±1.00 5.978±2.85 3.373±1.11
ENSMUST00000109381 3.001±1.81 1.155±0.11 2.901±0.73 6.657±1.15 1.604±0.02 3.128±0.48 1.031±0.49 1.629±0.81 1.591±1.05 3.261±1.28 2.402±0.72 3.023±1.75 15.631±7.64 3.544±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007IS CIL_0007IS_0002 CGP 15:88687300-88784516

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0042393 IEA histone binding
GO:0043966 IEA histone H3 acetylation
GO:0070776 IEA MOZ/MORF histone acetyltransferase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013596 brd1a bromodomain containing 1a protein_coding Danio_rerio
ENSDARG00000051798 brd1b bromodomain containing 1b protein_coding Danio_rerio
ENSG00000100425 BRD1 bromodomain containing 1 protein_coding Homo_sapiens

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