C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109381 Brd1-001 ENSMUSG00000022387 10090 - 15:88687300-88734233 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109381 3.001±1.81 1.155±0.11 2.901±0.73 6.657±1.15 1.604±0.02 3.128±0.48 1.031±0.49 1.629±0.81 1.591±1.05 3.261±1.28 2.402±0.72 3.023±1.75 15.631±7.64 3.544±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007IS CIL_0007IS_0002 CGP 15:88687300-88784516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0042393 IEA histone binding
GO:0043966 IEA histone H3 acetylation
GO:0070776 IEA MOZ/MORF histone acetyltransferase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216267 BRD1-002 protein_coding Homo_sapiens 0 2992
ENST00000339717 BRPF3-003 protein_coding Homo_sapiens 0 383
ENST00000357641 BRPF3-001 protein_coding Homo_sapiens 0 383
ENST00000404034 BRD1-001 protein_coding Homo_sapiens 0 2990
ENST00000404760 BRD1-003 protein_coding Homo_sapiens 0 5387
ENST00000438393 BRD1-004 nonsense_mediated_decay Homo_sapiens 0 1773
ENST00000441123 BRPF3-004 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000449261 BRPF3-009 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000457780 BRD1-201 protein_coding Homo_sapiens 0 5352
ENST00000459821 BRD1-005 processed_transcript Homo_sapiens 0 453
ENST00000479985 BRD1-007 retained_intron Homo_sapiens 0 261
ENST00000494833 BRD1-006 processed_transcript Homo_sapiens 0 313
ENST00000532330 BRPF3-010 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000534400 BRPF3-011 protein_coding Homo_sapiens 0 383
ENST00000534694 BRPF3-008 protein_coding Homo_sapiens 0 383

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