C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109380 Brd1-002 ENSMUSG00000022387 10090 - 15:88688296-88730771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000109380
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000109380 3.874±1.50 5.208±1.26 2.713±0.71 2.650±0.00 2.723±1.34 7.797±0.87 1.521±0.20 2.923±0.74 1.326±0.43 6.338±1.47 6.934±1.00 5.978±2.85 3.373±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007IS CIL_0007IS_0002 CGP 15:88687300-88784516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216267 BRD1-002 protein_coding Homo_sapiens 0 3912
ENST00000339717 BRPF3-003 protein_coding Homo_sapiens 0 383
ENST00000357641 BRPF3-001 protein_coding Homo_sapiens 0 383
ENST00000404034 BRD1-001 protein_coding Homo_sapiens 0 3879
ENST00000404760 BRD1-003 protein_coding Homo_sapiens 0 2992
ENST00000438393 BRD1-004 nonsense_mediated_decay Homo_sapiens 0 1500
ENST00000441123 BRPF3-004 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000449261 BRPF3-009 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000457780 BRD1-201 protein_coding Homo_sapiens 0 3024
ENST00000459821 BRD1-005 processed_transcript Homo_sapiens 0 453
ENST00000479985 BRD1-007 retained_intron Homo_sapiens 0 261
ENST00000494833 BRD1-006 processed_transcript Homo_sapiens 0 313
ENST00000532330 BRPF3-010 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000534400 BRPF3-011 protein_coding Homo_sapiens 0 383
ENST00000534694 BRPF3-008 protein_coding Homo_sapiens 0 383

Loading