C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100425 BRD1 9606 - 22:49773283-49827512 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216267 BRD1-002 49773283-49824804 protein_coding
  ENST00000404034 BRD1-001 49773283-49825900 protein_coding
  ENST00000404760 BRD1-003 49773283-49827512 protein_coding
  ENST00000438393 BRD1-004 49773283-49823213 nonsense_mediated_decay
  ENST00000457780 BRD1-201 49773293-49824804 protein_coding
  ENST00000459821 BRD1-005 49818212-49823301 processed_transcript
  ENST00000479985 BRD1-007 49775261-49776115 retained_intron
  ENST00000494833 BRD1-006 49820833-49823205 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216267ENST00000404034ENST00000404760ENST00000438393ENST00000457780
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216267 N/A N/A N/A N/A 0.537±0.00 N/A N/A N/A N/A N/A N/A 0.785±0.00 N/A N/A
ENST00000404034 N/A N/A N/A N/A 1.334±0.00 1.106±0.00 0.776±0.09 0.938±0.00 0.843±0.00 N/A N/A 1.867±0.00 N/A N/A
ENST00000404760 1.286±0.00 5.174±0.00 0.923±0.00 0.779±0.42 0.679±0.24 3.172±0.07 0.720±0.00 1.412±0.89 0.558±0.00 1.524±0.11 0.853±0.00 6.128±3.83 2.834±1.67 35.261±25.70
ENST00000438393 N/A 1.493±0.00 N/A 0.862±0.10 1.587±0.00 N/A N/A 1.473±0.98 1.524±0.27 2.379±0.00 1.079±0.26 N/A 1.519±0.34 6.267±0.00
ENST00000457780 N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007IS CIL_0007IS_0001 CGP 22:49773283-49890078

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0042393 IDA histone binding
GO:0043966 IDA histone H3 acetylation
GO:0070776 IDA MOZ/MORF histone acetyltransferase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013596 brd1a bromodomain containing 1a protein_coding Danio_rerio
ENSDARG00000051798 brd1b bromodomain containing 1b protein_coding Danio_rerio
ENSMUSG00000022387 Brd1 bromodomain containing 1 protein_coding Mus_musculus

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