C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thyrotroph embryonic factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022389 Tef 10090 + 15:81802421-81826861 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023024 Tef-006 81811414-81826698 protein_coding
  ENSMUST00000109553 Tef-001 81802421-81826861 protein_coding
  ENSMUST00000164673 Tef-005 81802737-81817012 retained_intron
  ENSMUST00000166302 Tef-004 81802707-81806049 processed_transcript
  ENSMUST00000167138 Tef-007 81820593-81821383 processed_transcript
  ENSMUST00000168200 Tef-008 81811046-81821256 protein_coding
  ENSMUST00000168632 Tef-010 81820943-81823779 retained_intron
  ENSMUST00000169952 Tef-003 81802826-81805911 processed_transcript
  ENSMUST00000170027 Tef-002 81802730-81805354 processed_transcript
  ENSMUST00000172208 Tef-009 81812159-81815209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023024ENSMUST00000109553ENSMUST00000164673ENSMUST00000168632
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023024 12.948±4.91 22.279±3.17 26.790±0.16 8.341±5.81 12.165±0.98 5.395±1.01 7.911±1.21 12.679±0.41 4.691±3.09 19.229±8.43 43.471±5.87 20.424±7.05 2.870±1.22 4.334±2.15
ENSMUST00000109553 7.868±0.00 4.399±1.02 34.166±6.22 N/A N/A 1.508±0.00 N/A 18.394±7.43 2.575±2.07 20.390±2.30 21.704±6.51 5.640±0.75 0.724±0.00 0.397±0.00
ENSMUST00000164673 5.219±0.00 N/A N/A 2.541±0.00 N/A N/A N/A N/A 2.621±1.72 14.723±3.73 N/A N/A N/A 0.642±0.00
ENSMUST00000168632 N/A N/A N/A 78.722±0.00 N/A N/A N/A N/A N/A N/A N/A 55.092±0.00 8.058±5.83 9.176±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065M CIL_00065M_0002 CGP 15:81744848-81826861

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003690 IDA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0042803 IEA protein homodimerization activity
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038401 tefb thyrotroph embryonic factor b protein_coding Danio_rerio
ENSDARG00000039117 tefa thyrotroph embryonic factor a protein_coding Danio_rerio
ENSG00000167074 TEF thyrotrophic embryonic factor protein_coding Homo_sapiens

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