C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GPI anchor attachment protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022561 Gpaa1 10090 + 15:76331231-76334907 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023221 Gpaa1-001 76331231-76334907 protein_coding
  ENSMUST00000163798 Gpaa1-010 76331350-76332814 retained_intron
  ENSMUST00000164680 Gpaa1-005 76332223-76333617 retained_intron
  ENSMUST00000164972 Gpaa1-003 76331344-76334898 nonsense_mediated_decay
  ENSMUST00000165179 Gpaa1-006 76333731-76334298 retained_intron
  ENSMUST00000168948 Gpaa1-009 76332527-76333247 protein_coding
  ENSMUST00000169378 Gpaa1-004 76331513-76332486 protein_coding
  ENSMUST00000170121 Gpaa1-008 76331999-76332921 nonsense_mediated_decay
  ENSMUST00000171005 Gpaa1-007 76333169-76334293 retained_intron
  ENSMUST00000172281 Gpaa1-002 76331345-76334903 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023221ENSMUST00000163798ENSMUST00000164680ENSMUST00000164972ENSMUST00000168948ENSMUST00000171005ENSMUST00000172281
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023221 35.128±9.20 79.642±8.87 20.317±4.47 27.300±19.40 43.692±6.94 58.589±11.62 13.381±1.84 31.684±7.97 24.917±4.99 36.408±9.23 11.946±1.51 53.776±17.66 11.546±7.45 18.307±0.46
ENSMUST00000163798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.504±1.67 N/A N/A
ENSMUST00000164680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.516±0.00 N/A N/A
ENSMUST00000164972 N/A N/A N/A 1.131±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168948 N/A N/A N/A N/A 16.153±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.194±0.00 N/A N/A N/A
ENSMUST00000172281 N/A N/A N/A 10.849±4.54 10.104±2.49 12.750±0.00 8.113±0.00 10.833±2.48 11.503±4.55 N/A 2.848±0.00 9.893±4.41 8.207±4.02 0.771±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026Y CIL_00026Y_0002 CGP 15:76327397-76334907
CIL_00026V CIL_00026V_0002 CGP 15:76331231-76345934

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003923 TAS GPI-anchor transamidase activity
GO:0005515 IEA protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0006506 ISS:IEA GPI anchor biosynthetic process
GO:0016020 IEA membrane
GO:0034235 ISS GPI anchor binding
GO:0042765 IEA GPI-anchor transamidase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074571 GPAA1 glycosylphosphatidylinositol anchor attachment 1 protein_coding Danio_rerio
ENSG00000197858 GPAA1 glycosylphosphatidylinositol anchor attachment 1 protein_coding Homo_sapiens

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