C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GPI anchor attachment protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023221 Gpaa1-001 ENSMUSG00000022561 10090 + 15:76331231-76334907 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023221
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023221 35.128±9.20 79.642±8.87 20.317±4.47 27.300±19.40 43.692±6.94 58.589±11.62 13.381±1.84 31.684±7.97 24.917±4.99 36.408±9.23 11.946±1.51 53.776±17.66 11.546±7.45 18.307±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026Y CIL_00026Y_0002 CGP 15:76327397-76334907
CIL_00026V CIL_00026V_0002 CGP 15:76331231-76345934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003923 TAS GPI-anchor transamidase activity
GO:0005515 IEA protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0006506 ISS:IEA GPI anchor biosynthetic process
GO:0016020 IEA membrane
GO:0034235 ISS GPI anchor binding
GO:0042765 IEA GPI-anchor transamidase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355091 GPAA1-001 protein_coding Homo_sapiens 0 2006
ENST00000361036 GPAA1-002 protein_coding Homo_sapiens 0 1707
ENST00000417923 AC112229.4-001 transcribed_processed_pseudogene Homo_sapiens 0 361
ENST00000453019 GPAA1P1-001 transcribed_processed_pseudogene Homo_sapiens 0 353
ENST00000524418 GPAA1-016 protein_coding Homo_sapiens 0 590
ENST00000525087 GPAA1-014 protein_coding Homo_sapiens 0 660
ENST00000525308 GPAA1-009 retained_intron Homo_sapiens 0 484
ENST00000526233 GPAA1-019 processed_transcript Homo_sapiens 0 534
ENST00000527144 GPAA1-018 processed_transcript Homo_sapiens 0 514
ENST00000527653 GPAA1-007 retained_intron Homo_sapiens 0 416
ENST00000528073 GPAA1-017 nonsense_mediated_decay Homo_sapiens 0 981
ENST00000529503 GPAA1-012 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000529638 GPAA1-006 retained_intron Homo_sapiens 0 597
ENST00000530258 GPAA1-008 protein_coding Homo_sapiens 0 398
ENST00000530633 GPAA1-015 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000531593 GPAA1-010 retained_intron Homo_sapiens 0 213
ENST00000606848 AC112229.4-003 processed_transcript Homo_sapiens 0 370

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