C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycosylphosphatidylinositol anchor attachment 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197858 GPAA1 9606 + 8:144082590-144086216 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355091 GPAA1-001 144082610-144086216 protein_coding
  ENST00000361036 GPAA1-002 144082668-144086216 protein_coding
  ENST00000524418 GPAA1-016 144082686-144084339 protein_coding
  ENST00000525087 GPAA1-014 144082614-144084747 protein_coding
  ENST00000525308 GPAA1-009 144083253-144084325 retained_intron
  ENST00000526233 GPAA1-019 144083989-144084849 processed_transcript
  ENST00000526341 GPAA1-013 144082592-144083749 processed_transcript
  ENST00000527144 GPAA1-018 144083215-144084795 processed_transcript
  ENST00000527653 GPAA1-007 144084128-144085095 retained_intron
  ENST00000528073 GPAA1-017 144082688-144084519 nonsense_mediated_decay
  ENST00000529503 GPAA1-012 144082590-144084330 nonsense_mediated_decay
  ENST00000529638 GPAA1-006 144084191-144086185 retained_intron
  ENST00000530258 GPAA1-008 144082905-144083737 protein_coding
  ENST00000530633 GPAA1-015 144082626-144084585 nonsense_mediated_decay
  ENST00000530796 GPAA1-005 144084793-144086183 retained_intron
  ENST00000531593 GPAA1-010 144084737-144085446 retained_intron
  ENST00000532758 GPAA1-003 144082622-144084274 retained_intron
  ENST00000534072 GPAA1-011 144084852-144086184 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355091ENST00000361036ENST00000526233ENST00000526341ENST00000527144ENST00000528073ENST00000529503ENST00000530258ENST00000530796ENST00000531593ENST00000532758ENST00000534072
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355091 19.845±0.00 32.315±0.00 0.887±0.00 17.480±0.00 23.293±20.37 15.349±0.00 11.319±10.25 51.025±0.00 21.504±19.35 16.203±0.00 13.373±12.70 34.209±21.53 44.813±8.12 16.549±5.53
ENST00000361036 N/A 12.556±0.00 N/A 5.837±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.270±0.00
ENST00000526233 30.965±0.00 N/A N/A N/A 43.535±0.00 14.328±0.00 N/A N/A N/A 1.260±0.00 N/A 54.907±0.00 N/A 34.524±0.00
ENST00000526341 N/A N/A N/A N/A N/A 4.194±0.00 N/A N/A N/A N/A N/A 1.904±0.00 N/A N/A
ENST00000527144 N/A N/A N/A 13.302±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528073 N/A N/A 1.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.412±0.00
ENST00000529503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.169±0.00 N/A N/A
ENST00000530258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.562±0.00 N/A N/A
ENST00000530796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.742±0.00 N/A N/A N/A
ENST00000531593 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.942±0.00 N/A 37.096±0.00 N/A 20.250±0.00
ENST00000532758 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.379±0.00 N/A N/A N/A N/A
ENST00000534072 N/A N/A 1.301±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.137±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026Y CIL_00026Y_0001 CGP 8:144078626-144086216
CIL_00026V CIL_00026V_0001 CGP 8:144082590-144097525

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003923 NAS GPI-anchor transamidase activity
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006461 NAS protein complex assembly
GO:0006501 TAS C-terminal protein lipidation
GO:0006621 NAS protein retention in ER lumen
GO:0015631 NAS tubulin binding
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016255 TAS attachment of GPI anchor to protein
GO:0034235 IMP GPI anchor binding
GO:0042765 IEA:TAS GPI-anchor transamidase complex
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074571 GPAA1 glycosylphosphatidylinositol anchor attachment 1 protein_coding Danio_rerio
ENSMUSG00000022561 Gpaa1 GPI anchor attachment protein 1 protein_coding Mus_musculus

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