C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activated leukocyte cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170035 Alcam-004 ENSMUSG00000022636 10090 - 16:52251467-52452465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000170035
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000170035 6.869±0.39 12.111±3.98 7.240±0.00 4.092±1.05 0.055±0.00 7.168±3.31 0.788±0.62 0.418±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IY CIL_0003IY_0002 CGP 16:52031549-52454074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007411 IMP axon guidance
GO:0008045 IMP motor neuron axon guidance
GO:0009897 IDA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030424 IDA axon
GO:0043025 IDA neuronal cell body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306107 ALCAM-001 protein_coding Homo_sapiens 0 1821
ENST00000460954 ALCAM-008 processed_transcript Homo_sapiens 0 514
ENST00000465413 ALCAM-007 protein_coding Homo_sapiens 0 673
ENST00000470756 ALCAM-003 retained_intron Homo_sapiens 0 468
ENST00000472644 ALCAM-002 protein_coding Homo_sapiens 0 2322
ENST00000481337 ALCAM-004 processed_transcript Homo_sapiens 0 1094
ENST00000486979 ALCAM-005 protein_coding Homo_sapiens 0 1759
ENST00000489178 ALCAM-009 retained_intron Homo_sapiens 5.60519e-45 185
ENST00000491388 ALCAM-006 retained_intron Homo_sapiens 0 669

Loading