C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activated leukocyte cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023312 Alcam-001 ENSMUSG00000022636 10090 - 16:52248996-52454074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023312 8.084±1.60 4.129±1.31 4.147±1.69 3.676±2.04 6.217±1.12 3.754±0.45 0.806±0.10 3.144±1.12 4.184±1.37 40.659±2.39 0.052±0.02 5.085±2.81 0.767±0.65 0.393±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IY CIL_0003IY_0002 CGP 16:52031549-52454074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005925 IEA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007411 IMP axon guidance
GO:0008045 IMP motor neuron axon guidance
GO:0009897 IDA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030424 IDA axon
GO:0043025 IDA neuronal cell body
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306107 ALCAM-001 protein_coding Homo_sapiens 0 2904
ENST00000460954 ALCAM-008 processed_transcript Homo_sapiens 0 514
ENST00000465413 ALCAM-007 protein_coding Homo_sapiens 0 1587
ENST00000470756 ALCAM-003 retained_intron Homo_sapiens 0 636
ENST00000472644 ALCAM-002 protein_coding Homo_sapiens 0 1879
ENST00000481337 ALCAM-004 processed_transcript Homo_sapiens 0 1094
ENST00000486979 ALCAM-005 protein_coding Homo_sapiens 0 2202
ENST00000489178 ALCAM-009 retained_intron Homo_sapiens 0 309
ENST00000491388 ALCAM-006 retained_intron Homo_sapiens 0 1583

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