C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear cap binding protein subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115178 Ncbp2-002 ENSMUSG00000022774 10090 + 16:31948613-31957176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000115178
Transcript ID Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000115178 60.466±0.00 4.077±0.00 10.473±0.00 1.929±0.00 110.124±0.00 104.523±27.00 108.848±86.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000339 IEA RNA cap binding
GO:0005846 IEA nuclear cap binding complex
GO:0045292 IEA mRNA cis splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321256 NCBP2-001 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000427641 NCBP2-004 protein_coding Homo_sapiens 0 424
ENST00000428425 NCBP2-005 nonsense_mediated_decay Homo_sapiens 5e-24 117
ENST00000463783 NCBP2-002 retained_intron Homo_sapiens 3.99931e-42 178
ENST00000468923 NCBP2-008 retained_intron Homo_sapiens 1.00053e-42 178
ENST00000482976 NCBP2-009 retained_intron Homo_sapiens 2e-23 113

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