C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, alpha 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023004 Tuba1b 10090 - 15:98931425-98934565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077577 Tuba1b-001 98931425-98934565 protein_coding
  ENSMUST00000140969 Tuba1b-002 98932776-98934438 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077577ENSMUST00000140969
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077577 106.574±19.98 85.957±4.51 141.940±47.23 62.726±0.00 111.171±12.46 61.155±7.23 37.208±6.66 41.814±2.46 232.299±327.55 86.783±6.01 6.773±1.71 131.965±34.76 126.660±70.24 10.958±2.74
ENSMUST00000140969 462.027±13.92 82.621±8.39 106.681±48.96 N/A 266.550±19.15 153.499±59.67 87.632±11.65 89.350±23.65 183.723±200.00 286.077±23.41 N/A 645.736±51.24 213.441±33.00 41.258±7.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000A CIL_00000A_0002 CGP 15:98903921-98934565
CIL_00000B CIL_00000B_0002 CGP 15:98931425-98953551

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0003725 ISO double-stranded RNA binding
GO:0003924 IEA GTPase activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005829 TAS cytosol
GO:0005874 IDA microtubule
GO:0005881 IDA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000123416 TUBA1B tubulin, alpha 1b protein_coding Homo_sapiens

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