C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, alpha 1b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123416 TUBA1B 9606 - 12:49127782-49131397 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000332858 TUBA1B-002 49127786-49131395 retained_intron
  ENST00000336023 TUBA1B-001 49127782-49131395 protein_coding
  ENST00000547476 TUBA1B-007 49129286-49131397 protein_coding
  ENST00000547765 TUBA1B-006 49127818-49131395 nonsense_mediated_decay
  ENST00000549870 TUBA1B-011 49129268-49130113 protein_coding
  ENST00000550367 TUBA1B-010 49128454-49131395 protein_coding
  ENST00000551324 TUBA1B-008 49128981-49131395 retained_intron
  ENST00000552984 TUBA1B-009 49129364-49131395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336023 72.921±0.00 183.934±0.00 8.187±0.00 266.370±99.30 70.289±16.41 61.136±36.51 33.099±17.40 67.382±46.70 33.625±8.28 96.598±51.82 23.508±11.45 127.923±50.55 306.549±80.27 112.181±16.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000A CIL_00000A_0001 CGP 12:49096551-49131397
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0003725 IDA double-stranded RNA binding
GO:0003924 IEA GTPase activity
GO:0005198 TAS structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005874 TAS microtubule
GO:0005881 IEA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 TAS microtubule-based process
GO:0030705 TAS cytoskeleton-dependent intracellular transport
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0051301 TAS cell division
GO:0070062 IDA extracellular vesicular exosome
GO:0071353 IEA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000023004 Tuba1b tubulin, alpha 1B protein_coding Mus_musculus

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