C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077577 Tuba1b-001 ENSMUSG00000023004 10090 - 15:98931425-98934565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077577
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077577 106.574±19.98 85.957±4.51 141.940±47.23 62.726±0.00 111.171±12.46 61.155±7.23 37.208±6.66 41.814±2.46 232.299±327.55 86.783±6.01 6.773±1.71 131.965±34.76 126.660±70.24 10.958±2.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000A CIL_00000A_0002 CGP 15:98903921-98934565
CIL_00000B CIL_00000B_0002 CGP 15:98931425-98953551

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0003725 ISO double-stranded RNA binding
GO:0003924 IEA GTPase activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005829 TAS cytosol
GO:0005874 IDA microtubule
GO:0005881 IDA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1544
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1541
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1478
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 1336
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1279
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 1212
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 1186
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 627
ENSDART00000122569 tuba8l2-002 processed_transcript Danio_rerio 0 409
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 363
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 351
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 1513
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 1986
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 1986
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 1971
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 1400
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1428
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 2085
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 2169
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 1507
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 634
ENST00000425085 TUBAP-001 processed_pseudogene Homo_sapiens 0 1127
ENST00000437364 RP11-346M5.1-001 processed_pseudogene Homo_sapiens 0 1123
ENST00000437634 AC012501.3-001 transcribed_processed_pseudogene Homo_sapiens 0 957
ENST00000445574 RP11-184J23.2-001 processed_pseudogene Homo_sapiens 0 1136
ENST00000472881 RP11-959F10.5-001 processed_pseudogene Homo_sapiens 0 928
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 1315
ENST00000490341 TUBA4B-001 processed_transcript Homo_sapiens 0 1105
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 833
ENST00000501221 RP11-447H19.1-001 processed_pseudogene Homo_sapiens 0 1474
ENST00000505780 CTD-2158P22.4-001 processed_pseudogene Homo_sapiens 0 494
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 0 649
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 2001
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 1962
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 0 701
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 520
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 2085
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 1086
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 0 569
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 1578
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 0 573
ENST00000549818 TUBA1C-008 nonsense_mediated_decay Homo_sapiens 2e-23 113
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 553
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 0 366
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 730
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 1980
ENST00000550811 TUBA1A-010 protein_coding Homo_sapiens 0 303
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 0 440
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 1962
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 665
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 0 398
ENST00000559595 RP11-522B15.6-001 processed_pseudogene Homo_sapiens 0 510
ENST00000569261 TUBA8P2-001 transcribed_processed_pseudogene Homo_sapiens 0 385
ENST00000611325 RP11-386G11.11-001 processed_pseudogene Homo_sapiens 0 244

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