C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140969 Tuba1b-002 ENSMUSG00000023004 10090 - 15:98932776-98934438 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000140969
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000140969 462.027±13.92 82.621±8.39 106.681±48.96 266.550±19.15 153.499±59.67 87.632±11.65 89.350±23.65 183.723±200.00 286.077±23.41 645.736±51.24 213.441±33.00 41.258±7.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000A CIL_00000A_0002 CGP 15:98903921-98934565
CIL_00000B CIL_00000B_0002 CGP 15:98931425-98953551

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 254
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 254
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 248
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 243
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 220
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 215
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 215
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 215
ENSDART00000122569 tuba8l2-002 processed_transcript Danio_rerio 0 209
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 209
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 366
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 366
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 364
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 250
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 255
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 355
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 438
ENST00000425085 TUBAP-001 processed_pseudogene Homo_sapiens 0 224
ENST00000472881 RP11-959F10.5-001 processed_pseudogene Homo_sapiens 4.99983e-42 176
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 220
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 398
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 355
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 0 368
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 355
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 361
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 0 366
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 0 364
ENST00000549818 TUBA1C-008 nonsense_mediated_decay Homo_sapiens 2e-23 113
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 355
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 0 368
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 438
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 361
ENST00000550811 TUBA1A-010 protein_coding Homo_sapiens 0 303
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 0 440
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 359
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 0 355

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