C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin gamma subfamily C, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003599 Pcdhga12-201 ENSMUSG00000023036 10090 + 18:37742094-37841873 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverLungOvaryPlacentaENSMUST00000003599
Transcript ID Bladder Brain Breast Kidney Liver Lung Ovary Placenta
ENSMUST00000003599 8.249±2.73 23.825±10.40 6.389±0.10 3.734±0.52 0.730±0.10 13.998±0.44 9.696±0.80 1.823±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252085 PCDHGA12-001 protein_coding Homo_sapiens 0 1125
ENST00000252087 PCDHGC5-001 protein_coding Homo_sapiens 0 1125
ENST00000253812 PCDHGA3-001 protein_coding Homo_sapiens 0 1125
ENST00000306593 PCDHGC4-001 protein_coding Homo_sapiens 0 1125
ENST00000308177 PCDHGC3-001 protein_coding Homo_sapiens 0 1125
ENST00000394576 PCDHGA2-001 protein_coding Homo_sapiens 0 1125
ENST00000398587 PCDHGA11-001 protein_coding Homo_sapiens 0 1125
ENST00000398594 PCDHGB7-001 protein_coding Homo_sapiens 0 1330
ENST00000398604 PCDHGA8-001 protein_coding Homo_sapiens 0 1125
ENST00000398610 PCDHGA10-001 protein_coding Homo_sapiens 0 1123
ENST00000517417 PCDHGA1-001 protein_coding Homo_sapiens 0 1125
ENST00000517434 PCDHGA6-001 protein_coding Homo_sapiens 0 1125
ENST00000518069 PCDHGA5-001 protein_coding Homo_sapiens 0 1125
ENST00000518325 PCDHGA7-001 protein_coding Homo_sapiens 0 1125
ENST00000518882 PCDHGA11-003 protein_coding Homo_sapiens 0 531
ENST00000519479 PCDHGB4-001 protein_coding Homo_sapiens 0 1921
ENST00000520790 PCDHGB6-001 protein_coding Homo_sapiens 0 3057
ENST00000522605 PCDHGB2-001 protein_coding Homo_sapiens 0 1125
ENST00000523390 PCDHGB1-001 protein_coding Homo_sapiens 0 1123
ENST00000571252 PCDHGA4-001 protein_coding Homo_sapiens 0 1125
ENST00000573521 PCDHGA9-001 protein_coding Homo_sapiens 0 1129
ENST00000576222 PCDHGB3-001 protein_coding Homo_sapiens 0 1125
ENST00000611598 PCDHGB1-002 protein_coding Homo_sapiens 0 876
ENST00000612073 PCDHGB7-003 protein_coding Homo_sapiens 0 1330
ENST00000612467 PCDHGA3-003 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000615384 PCDHGB4-002 protein_coding Homo_sapiens 0 874
ENST00000617222 PCDHGC3-006 protein_coding Homo_sapiens 0 562
ENST00000617380 PCDHGB5-001 protein_coding Homo_sapiens 0 1978
ENST00000617641 PCDHGC3-002 protein_coding Homo_sapiens 0 1125
ENST00000618371 PCDHGC4-004 protein_coding Homo_sapiens 0 726
ENST00000621169 PCDHGB5-002 protein_coding Homo_sapiens 0 913
ENST00000622527 PCDHGB2-002 protein_coding Homo_sapiens 0 821
ENST00000622656 PCDHGC3-007 processed_transcript Homo_sapiens 0 217
ENST00000622836 PCDHGC3-008 processed_transcript Homo_sapiens 0.0000000005 69

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