C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin gamma subfamily C, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091935 Pcdhga12-209 ENSMUSG00000023036 10090 + 18:37736936-37841845 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007283 IEA spermatogenesis
GO:0016021 IEA integral component of membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252085 PCDHGA12-001 protein_coding Homo_sapiens 0 1770
ENST00000252087 PCDHGC5-001 protein_coding Homo_sapiens 0 1123
ENST00000253812 PCDHGA3-001 protein_coding Homo_sapiens 0 1690
ENST00000306593 PCDHGC4-001 protein_coding Homo_sapiens 0 1123
ENST00000308177 PCDHGC3-001 protein_coding Homo_sapiens 0 1123
ENST00000378105 PCDHGA1-002 protein_coding Homo_sapiens 0 588
ENST00000394576 PCDHGA2-001 protein_coding Homo_sapiens 0 1692
ENST00000398587 PCDHGA11-001 protein_coding Homo_sapiens 0 1622
ENST00000398594 PCDHGB7-001 protein_coding Homo_sapiens 0 1123
ENST00000398604 PCDHGA8-001 protein_coding Homo_sapiens 0 2492
ENST00000398610 PCDHGA10-001 protein_coding Homo_sapiens 0 2185
ENST00000517417 PCDHGA1-001 protein_coding Homo_sapiens 0 1622
ENST00000517434 PCDHGA6-001 protein_coding Homo_sapiens 0 1688
ENST00000518069 PCDHGA5-001 protein_coding Homo_sapiens 0 1622
ENST00000518325 PCDHGA7-001 protein_coding Homo_sapiens 0 1984
ENST00000518882 PCDHGA11-003 protein_coding Homo_sapiens 0 529
ENST00000519479 PCDHGB4-001 protein_coding Homo_sapiens 0 1123
ENST00000520790 PCDHGB6-001 protein_coding Homo_sapiens 0 1123
ENST00000522605 PCDHGB2-001 protein_coding Homo_sapiens 0 1123
ENST00000523390 PCDHGB1-001 protein_coding Homo_sapiens 0 1123
ENST00000571252 PCDHGA4-001 protein_coding Homo_sapiens 0 1626
ENST00000573521 PCDHGA9-001 protein_coding Homo_sapiens 0 3142
ENST00000576222 PCDHGB3-001 protein_coding Homo_sapiens 0 1123
ENST00000610569 PCDHGA8-002 protein_coding Homo_sapiens 0 1445
ENST00000612467 PCDHGA3-003 nonsense_mediated_decay Homo_sapiens 0 1096
ENST00000616887 PCDHGA9-002 protein_coding Homo_sapiens 0 2023
ENST00000617050 PCDHGA7-002 protein_coding Homo_sapiens 0 931
ENST00000617222 PCDHGC3-006 protein_coding Homo_sapiens 0 560
ENST00000617380 PCDHGB5-001 protein_coding Homo_sapiens 0 1123
ENST00000617641 PCDHGC3-002 protein_coding Homo_sapiens 0 1123
ENST00000618371 PCDHGC4-004 protein_coding Homo_sapiens 0 725
ENST00000622656 PCDHGC3-007 processed_transcript Homo_sapiens 0 215
ENST00000622836 PCDHGC3-008 processed_transcript Homo_sapiens 0.0000000005 69

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