C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin gamma subfamily C, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076807 Pcdhga12-208 ENSMUSG00000023036 10090 + 18:37806410-37841873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076807 31.283±9.08 72.199±9.54 26.646±7.67 41.510±17.01 23.654±4.18 15.488±1.32 12.550±2.21 10.384±0.88 2.368±0.42 48.705±1.57 3.517±0.38 38.435±9.10 7.747±2.75 2.318±1.38

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252085 PCDHGA12-001 protein_coding Homo_sapiens 0 1127
ENST00000252087 PCDHGC5-001 protein_coding Homo_sapiens 0 1129
ENST00000253812 PCDHGA3-001 protein_coding Homo_sapiens 0 1129
ENST00000306593 PCDHGC4-001 protein_coding Homo_sapiens 0 1127
ENST00000308177 PCDHGC3-001 protein_coding Homo_sapiens 0 4087
ENST00000394576 PCDHGA2-001 protein_coding Homo_sapiens 0 1129
ENST00000398587 PCDHGA11-001 protein_coding Homo_sapiens 0 1129
ENST00000398594 PCDHGB7-001 protein_coding Homo_sapiens 0 1131
ENST00000398604 PCDHGA8-001 protein_coding Homo_sapiens 0 1131
ENST00000398610 PCDHGA10-001 protein_coding Homo_sapiens 0 1123
ENST00000517417 PCDHGA1-001 protein_coding Homo_sapiens 0 1129
ENST00000517434 PCDHGA6-001 protein_coding Homo_sapiens 0 1129
ENST00000518069 PCDHGA5-001 protein_coding Homo_sapiens 0 1129
ENST00000518325 PCDHGA7-001 protein_coding Homo_sapiens 0 1129
ENST00000518882 PCDHGA11-003 protein_coding Homo_sapiens 0 532
ENST00000519479 PCDHGB4-001 protein_coding Homo_sapiens 0 1129
ENST00000520790 PCDHGB6-001 protein_coding Homo_sapiens 0 1125
ENST00000522605 PCDHGB2-001 protein_coding Homo_sapiens 0 1127
ENST00000523390 PCDHGB1-001 protein_coding Homo_sapiens 0 1123
ENST00000571252 PCDHGA4-001 protein_coding Homo_sapiens 0 1129
ENST00000573521 PCDHGA9-001 protein_coding Homo_sapiens 0 1125
ENST00000576222 PCDHGB3-001 protein_coding Homo_sapiens 0 1127
ENST00000611950 PCDHGC3-003 protein_coding Homo_sapiens 0 2983
ENST00000612467 PCDHGA3-003 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000616230 PCDHGC3-004 processed_transcript Homo_sapiens 0 874
ENST00000617222 PCDHGC3-006 protein_coding Homo_sapiens 0 778
ENST00000617380 PCDHGB5-001 protein_coding Homo_sapiens 0 1125
ENST00000617641 PCDHGC3-002 protein_coding Homo_sapiens 0 1129
ENST00000618371 PCDHGC4-004 protein_coding Homo_sapiens 0 728
ENST00000621008 PCDHGC3-005 protein_coding Homo_sapiens 0 830
ENST00000622656 PCDHGC3-007 processed_transcript Homo_sapiens 0 433
ENST00000622836 PCDHGC3-008 processed_transcript Homo_sapiens 0.0000000005 69

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