C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4 carbon catabolite repression 4-like (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023849 Ccrn4l-001 ENSMUSG00000023087 10090 + 3:51224447-51251644 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLiverOvaryENSMUST00000023849
Transcript ID Adrenal Liver Ovary
ENSMUST00000023849 1.542±0.04 0.967±0.00 3.126±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001Q CIL_00001Q_0002 CGP 3:50364936-51251644
CIL_0006YJ CIL_0006YJ_0003 CGP 3:51224447-51340658

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000290 IGI deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003729 IDA mRNA binding
GO:0004535 IDA poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0007623 IEP circadian rhythm
GO:0009991 IDA response to extracellular stimulus
GO:0010629 IMP negative regulation of gene expression
GO:0032496 IDA response to lipopolysaccharide
GO:0032922 IMP circadian regulation of gene expression
GO:0033962 IGI cytoplasmic mRNA processing body assembly
GO:0042752 IMP regulation of circadian rhythm
GO:0045600 IMP positive regulation of fat cell differentiation
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0045995 IMP regulation of embryonic development
GO:0046872 IEA metal ion binding
GO:0048255 IMP mRNA stabilization
GO:0048471 IDA perinuclear region of cytoplasm
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280614 CCRN4L-001 protein_coding Homo_sapiens 0 1356
ENST00000515616 CCRN4L-003 retained_intron Homo_sapiens 0 848

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