C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: density-regulated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023106 Denr 10090 + 5:123907175-123928832 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023869 Denr-001 123907175-123928832 protein_coding
  ENSMUST00000166233 Denr-002 123907489-123927133 protein_coding
  ENSMUST00000168899 Denr-003 123907269-123908508 processed_transcript
  ENSMUST00000171639 Denr-004 123907282-123908488 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023869ENSMUST00000166233ENSMUST00000168899
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023869 4.657±1.61 2.726±0.89 10.880±0.85 12.352±0.93 3.336±0.66 2.796±0.72 3.046±0.52 4.356±1.73 8.312±4.68 4.301±0.47 3.953±0.86 3.721±2.75 10.004±4.81 15.437±0.34
ENSMUST00000166233 N/A N/A 14.898±1.02 117.807±0.00 N/A N/A N/A N/A 16.419±7.37 N/A 16.680±4.24 52.690±44.95 72.118±88.22 205.944±0.00
ENSMUST00000168899 N/A 7.208±1.94 N/A N/A 6.747±1.66 6.898±1.69 18.858±4.18 16.369±5.12 17.152±3.91 11.717±0.57 N/A 6.546±3.14 28.293±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0002PG CIL_0002PG_0002 CGP 5:123876736-123928832
CIL_0002P9 CIL_0002P9_0002 CGP 5:123907175-123969895

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0002192 IEA IRES-dependent translational initiation
GO:0003674 ND molecular_function
GO:0003743 IEA translation initiation factor activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006413 IEA translational initiation
GO:0032790 IEA ribosome disassembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037229 denr density-regulated protein protein_coding Danio_rerio
ENSG00000139726 DENR density-regulated protein protein_coding Homo_sapiens

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