C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: density-regulated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023869 Denr-001 ENSMUSG00000023106 10090 + 5:123907175-123928832 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023869
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023869 4.657±1.61 2.726±0.89 10.880±0.85 12.352±0.93 3.336±0.66 2.796±0.72 3.046±0.52 4.356±1.73 8.312±4.68 4.301±0.47 3.953±0.86 3.721±2.75 10.004±4.81 15.437±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0002PG CIL_0002PG_0002 CGP 5:123876736-123928832
CIL_0002P9 CIL_0002P9_0002 CGP 5:123907175-123969895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0002192 IEA IRES-dependent translational initiation
GO:0003674 ND molecular_function
GO:0003743 IEA translation initiation factor activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006413 IEA translational initiation
GO:0032790 IEA ribosome disassembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280557 DENR-001 protein_coding Homo_sapiens 0 959
ENST00000433096 RP4-785G19.2-001 processed_pseudogene Homo_sapiens 0 686
ENST00000439400 RP13-225O21.5-001 processed_pseudogene Homo_sapiens 0 593
ENST00000455982 DENR-002 protein_coding Homo_sapiens 0 739
ENST00000539463 DENR-004 retained_intron Homo_sapiens 0 381
ENST00000547993 NAP1L1-015 retained_intron Homo_sapiens 0 429
ENST00000552477 RP11-290L1.4-001 processed_pseudogene Homo_sapiens 0 634
ENST00000607331 RP11-269G24.8-001 transcribed_processed_pseudogene Homo_sapiens 0 399

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