C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002PG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196917-ENSG00000139726 CGP 9606 12:122726076-122771064
GeneTranscriptPositionBiotype
ENSG00000139726 (DENR)
density-regulated protein
ENST00000280557 (DENR-001) 122752774-122771064 protein_coding
ENST00000455982 (DENR-002) 122752824-122770070 protein_coding
ENST00000537955 (DENR-003) 122752847-122754287 retained_intron
ENST00000539463 (DENR-004) 122752827-122763256 retained_intron
ENSG00000196917 (HCAR1)
hydroxycarboxylic acid receptor 1
ENST00000432564 (HCAR1-001) 122726076-122730843 protein_coding
ENSG00000206914 (Y_RNA)
Y RNA
ENST00000384187 (Y_RNA.1-651) 122768099-122768200 misc_RNA
CIL_0002PG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049241-ENSMUSG00000023106 CGP 10090 5:123876736-123928832
GeneTranscriptPositionBiotype
ENSMUSG00000023106 (Denr)
density-regulated protein
ENSMUST00000023869 (Denr-001) 123907175-123928832 protein_coding
ENSMUST00000166233 (Denr-002) 123907489-123927133 protein_coding
ENSMUST00000168899 (Denr-003) 123907269-123908508 processed_transcript
ENSMUST00000171639 (Denr-004) 123907282-123908488 retained_intron
ENSMUSG00000049241 (Hcar1)
hydrocarboxylic acid receptor 1
ENSMUST00000164267 (Hcar1-001) 123876736-123880020 protein_coding
ENSMUSG00000061882 (Ccdc62)
coiled-coil domain containing 62
ENSMUST00000094320 (Ccdc62-001) 123930689-123968909 protein_coding
ENSMUST00000165148 (Ccdc62-201) 123930689-123969895 protein_coding
ENSMUST00000166129 (Ccdc62-003) 123927418-123938388 retained_intron
ENSMUST00000166983 (Ccdc62-002) 123930689-123936645 retained_intron
ENSMUST00000169898 (Ccdc62-004) 123946386-123954515 nonsense_mediated_decay
ENSMUST00000171881 (Ccdc62-005) 123954502-123957610 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002PG_0001ENSG00000139726ENST00000280557ENST00000455982ENST00000537955ENST00000539463ENSG00000196917ENST00000432564ENSG00000206914ENST00000384187CIL_0002PG_0002ENSMUSG00000023106ENSMUST00000023869ENSMUST00000166233ENSMUST00000168899ENSMUST00000171639ENSMUSG00000049241ENSMUST00000164267ENSMUSG00000061882ENSMUST00000094320ENSMUST00000165148ENSMUST00000166129ENSMUST00000166983ENSMUST00000169898ENSMUST00000171881
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002PG_0001ENSG00000139726ENST00000280557ENST00000455982ENSG00000196917ENST00000432564ENSG00000206914ENST00000384187CIL_0002PG_0002ENSMUSG00000023106ENSMUST00000023869ENSMUST00000166233ENSMUST00000168899ENSMUSG00000049241ENSMUST00000164267ENSMUSG00000061882ENSMUST00000094320ENSMUST00000166983
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139726 ENST00000280557 8.232±0.00 5.961±0.00 4.005±0.00 7.529±1.74 5.863±4.79 5.576±2.01 3.985±0.57 5.188±4.20 5.427±2.87 3.606±0.92 2.221±0.64 11.590±2.28 11.074±2.07 7.388±0.14
ENST00000455982 N/A N/A 1.141±0.00 N/A N/A N/A N/A N/A N/A N/A 0.911±0.00 16.963±0.00 14.963±0.00 7.863±0.00
ENST00000537955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196917 ENST00000432564 1.801±0.00 0.874±0.00 N/A 0.090±0.05 3.836±3.32 0.305±0.23 0.090±0.01 1.053±0.00 0.126±0.07 0.176±0.09 0.119±0.01 0.456±0.30 1.591±0.65 0.620±0.11
ENSG00000206914 ENST00000384187 N/A N/A N/A 0.181±0.00 0.349±0.00 N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A 0.163±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023106 ENSMUST00000023869 4.657±1.61 2.726±0.89 10.880±0.85 12.352±0.93 3.336±0.66 2.796±0.72 3.046±0.52 4.356±1.73 8.312±4.68 4.301±0.47 3.953±0.86 3.721±2.75 10.004±4.81 15.437±0.34
ENSMUST00000166233 N/A N/A 14.898±1.02 117.807±0.00 N/A N/A N/A N/A 16.419±7.37 N/A 16.680±4.24 52.690±44.95 72.118±88.22 205.944±0.00
ENSMUST00000168899 N/A 7.208±1.94 N/A N/A 6.747±1.66 6.898±1.69 18.858±4.18 16.369±5.12 17.152±3.91 11.717±0.57 N/A 6.546±3.14 28.293±0.00 N/A
ENSMUST00000171639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049241 ENSMUST00000164267 27.285±8.63 14.613±5.17 4.197±0.20 0.135±0.04 31.508±3.68 2.679±0.21 0.965±0.38 5.690±0.72 0.058±0.04 1.280±0.53 0.123±0.11 3.645±0.83 0.577±0.49 0.061±0.04
ENSMUSG00000061882 ENSMUST00000094320 1.435±0.11 0.955±0.21 3.464±0.71 2.209±0.01 1.532±0.33 0.701±0.08 0.494±0.00 1.460±0.27 0.996±0.28 1.524±0.32 N/A 1.692±0.72 N/A 36.193±10.86
ENSMUST00000165148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166983 N/A 2.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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